Non-Coding RNA Search

Ss1.1-reep17c_d11.5

Sequence:


               
               CACGAAGCAAAGCAGGAGGGAGCCCCGAGAGCACCAGCCACCCTGCCAGGCTGCGGCCCT
GGAGGCCCACACCCCAGGGGCTCCGTCGATGTCCTGGCGCCACTTGGAGAGGCCAGCCCC
ACGCAGAGGCCAAGGCCGCCAGTGCCCACAGCTGGTTCCAGGAAGCACGAGCCCAGCCGC
CGCAGAGGATAAAATGCCAAGCCCGGGCTCTGCCTTCAGGTGCCCAGCAGCCCACATGCT
TTCCTAGTCCCTCCCGTGCCTGACCTTGTTGGAGCACCTCCACCACCCCTCCAACCTCTG
ATGCCCTCTCCCTTGTCCCCATCCTGGCTTCTGGCAAATGACTCAGTCATTTCCCACGGA
AAAGCTTTCCAGCTCTCAGGACATTTAAAGCTCTGCCTAAGAAAACTTTTAATTCCCCTA
AGATCAAGCCAAAAATGAACTGGCTTCGATGACTAGCTGAGTTTGTGCTGGCCTCTAAGA
ACCCGGGAACAAATGGGATAGTTACTTACCAAAGGAGGCGGAGAGCCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CACGAAGCAAAGCAGGAGGGAGCCCCGAGAGCACCAGCCACCCTGCCAGGCTGCGGCCCT
GGAGGCCCACACCCCAGGGGCTCCGTCGATGTCCTGGCGCCACTTGGAGAGGCCAGCCCC
ACGCAGAGGCCAAGGCCGCCAGTGCCCACAGCTGGTTCCAGGAAGCACGAGCCCAGCCGC
CGCAGAGGATAAAATGCCAAGCCCGGGCTCTGCCTTCAGGTGCCCAGCAGCCCACATGCT
TTCCTAGTCCCTCCCGTGCCTGACCTTGTTGGAGCACCTCCACCACCCCTCCAACCTCTG
ATGCCCTCTCCCTTGTCCCCATCCTGGCTTCTGGCAAATGACTCAGTCATTTCCCACGGA
AAAGCTTTCCAGCTCTCAGGACATTTAAAGCTCTGCCTAAGAAAACTTTTAATTCCCCTA
AGATCAAGCCAAAAATGAACTGGCTTCGATGACTAGCTGAGTTTGTGCTGGCCTCTAAGA
ACCCGGGAACAAATGGGATAGTTACTTACCAAAGGAGGCGGAGAGCCA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               248-360, - strand, RNAz p=0.611118
               

               
               327-476, - strand, RNAz p=0.920122

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               248-360, - strand, RNAz p=0.611118
               

               
               327-476, - strand, RNAz p=0.920122

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               373-466, - strand, RNAmicro p=0.986663

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               373-466, - strand, RNAmicro p=0.986663

Aligned organism(s): 11 entry(ies)

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Aligned organism(s): 11 entry(ies)

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               248-476, gnl|bosTau2|chr26 (15980686-15980910)
               

               
               248-476, gnl|canFam2|chr28 (18815391-18815624)
               

               
               248-476, gnl|dasNov1|scaffold_2599 (65322-65519)
               

               
               248-476, gnl|echTel1|scaffold_323967 (24911-24672)
               

               
               248-476, gnl|hg17|chr10 (105195950-105196195)
               

               
               248-476, gnl|Hg17|chr10 (105196169-105195958)
               

               
               248-476, gnl|loxAfr1|scaffold_2052 (15088-14827)
               

               
               248-476, gnl|mm7|chr19 (47032208-47032508)
               

               
               248-476, gnl|panTro1|chr8 (106972423-106972668)
               

               
               248-476, gnl|rheMac2|chr9 (103139440-103139685)
               

               
               248-476, gnl|rn3|chr1 (252719085-252719321)

Aligned organism(s): 11 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               248-476, gnl|bosTau2|chr26 (15980686-15980910)
               

               
               248-476, gnl|canFam2|chr28 (18815391-18815624)
               

               
               248-476, gnl|dasNov1|scaffold_2599 (65322-65519)
               

               
               248-476, gnl|echTel1|scaffold_323967 (24911-24672)
               

               
               248-476, gnl|hg17|chr10 (105195950-105196195)
               

               
               248-476, gnl|Hg17|chr10 (105196169-105195958)
               

               
               248-476, gnl|loxAfr1|scaffold_2052 (15088-14827)
               

               
               248-476, gnl|mm7|chr19 (47032208-47032508)
               

               
               248-476, gnl|panTro1|chr8 (106972423-106972668)
               

               
               248-476, gnl|rheMac2|chr9 (103139440-103139685)
               

               
               248-476, gnl|rn3|chr1 (252719085-252719321)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               eep (0.122564)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eep (0.122564)

	248-360, - strand, RNAz p=0.611118
	327-476, - strand, RNAz p=0.920122

	248-476, gnl\|bosTau2\|chr26 (15980686-15980910)
	248-476, gnl\|canFam2\|chr28 (18815391-18815624)
	248-476, gnl\|dasNov1\|scaffold_2599 (65322-65519)
	248-476, gnl\|echTel1\|scaffold_323967 (24911-24672)
	248-476, gnl\|hg17\|chr10 (105195950-105196195)
	248-476, gnl\|Hg17\|chr10 (105196169-105195958)
	248-476, gnl\|loxAfr1\|scaffold_2052 (15088-14827)
	248-476, gnl\|mm7\|chr19 (47032208-47032508)
	248-476, gnl\|panTro1\|chr8 (106972423-106972668)
	248-476, gnl\|rheMac2\|chr9 (103139440-103139685)
	248-476, gnl\|rn3\|chr1 (252719085-252719321)