Ss1.1-reep17c_d19.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ACTAAGCCTTTCCACAGGAAGCTCAGCGAGCTTGCGGCCCCCGGCCCTGTGCAGTGGATG GCCGTGCTCAAGGACAAGCTCTGTGTTGGCTACCCTTCTGGGTTCTCCCTGTTGAGCCCC CAGGGAGAGGGGCAGGCTCTAAACCTGGTAAATCCCAATGACCCCTCGCTTACGTTCCTC TCACAGCAGTCTTTTGATGCCCTCTGTGCTGTGGAGCTCCAAAGTGAGGAGTACCTGCTT TGCTTCAGCCACATGGGACTGTACGTGGACCCACAAGGTCGGAGGTCACGCATGCAGGAG CTCATGTGGCCTGCGGCACCTGTCGCCTGTAGTTGCAGCCCCTCGCACGTGACGGTGTAC AGCGACTACGGCGTGGACGTCTTCGATGCGCGCTCCATGGAGTGGGTGCAGACCATCGGC CTGCGCAGGATCCGGCCGCTGAACTCGGAGGGCAGCCTCAACCTCCTCAACTGCGAGCCT CCCCGCCTCATCTACTTCAAGAGCAAGTTCGCGGGGCCGGCCCTCAACGTGCCCGACACC TCTGACAACAGCAAGAAGCAGATGCTTCGCACCAGGAGCAAGAGGCGGTTTGTCTTCAAG GTGCCGGAGGAGGAGCGGCTGCAGCAGCGGCGAGAGATGCTCAGAGACCCGGAGCTGAGG TCGCGGATGATCTCCAACCCCACCAACTTCAATCACGTGGCCCACATGGGCCCCGGCGAC GGCATGCAGGTGCTCATGGACCTG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ACTAAGCCTTTCCACAGGAAGCTCAGCGAGCTTGCGGCCCCCGGCCCTGTGCAGTGGATG GCCGTGCTCAAGGACAAGCTCTGTGTTGGCTACCCTTCTGGGTTCTCCCTGTTGAGCCCC CAGGGAGAGGGGCAGGCTCTAAACCTGGTAAATCCCAATGACCCCTCGCTTACGTTCCTC TCACAGCAGTCTTTTGATGCCCTCTGTGCTGTGGAGCTCCAAAGTGAGGAGTACCTGCTT TGCTTCAGCCACATGGGACTGTACGTGGACCCACAAGGTCGGAGGTCACGCATGCAGGAG CTCATGTGGCCTGCGGCACCTGTCGCCTGTAGTTGCAGCCCCTCGCACGTGACGGTGTAC AGCGACTACGGCGTGGACGTCTTCGATGCGCGCTCCATGGAGTGGGTGCAGACCATCGGC CTGCGCAGGATCCGGCCGCTGAACTCGGAGGGCAGCCTCAACCTCCTCAACTGCGAGCCT CCCCGCCTCATCTACTTCAAGAGCAAGTTCGCGGGGCCGGCCCTCAACGTGCCCGACACC TCTGACAACAGCAAGAAGCAGATGCTTCGCACCAGGAGCAAGAGGCGGTTTGTCTTCAAG GTGCCGGAGGAGGAGCGGCTGCAGCAGCGGCGAGAGATGCTCAGAGACCCGGAGCTGAGG TCGCGGATGATCTCCAACCCCACCAACTTCAATCACGTGGCCCACATGGGCCCCGGCGAC GGCATGCAGGTGCTCATGGACCTG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 201-333, + strand, RNAz p=0.988739 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 201-333, + strand, RNAz p=0.988739 |
| Predicted microRNA(s): 1 entry(ies) | More info |
| Predicted microRNA(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
| 136-240, - strand, RNAmicro p=0.917464 |
| Aligned organism(s): 38 entry(ies) | More info |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
| 1-333, gnl|bosTau2|chr21 (47101904-47101572) | |
| 1-333, gnl|canFam2|chr8 (73864326-73864931) | |
| 1-333, gnl|danRer3|chr20 (18728504-18729109) | |
| 1-333, gnl|dasNov1|scaffold_107875 (4747-4156) | |
| 1-333, gnl|echTel1|scaffold_294940 (57492-58085) | |
| 1-333, gnl|fr1|chrUn (182842564-182841831) | |
| 1-333, gnl|galGal2|chr5 (46723819-46724423) | |
| 1-333, gnl|hg17|chr14 (102479976-102480581) | |
| 1-333, gnl|Hg17|chr14 (102480311-102479979) | |
| 1-333, gnl|loxAfr1|scaffold_213449 (500-1105) | |
| 1-333, gnl|mm7|chr12 (108815496-108816104) | |
| 1-333, gnl|Mm7|chr12 (108815831-108815499) | |
| 1-333, gnl|monDom2|scaffold_6 (86986483-86987088) | |
| 1-333, gnl|oryCun1|scaffold_146799 (15951-15346) | |
| 1-333, gnl|panTro1|chr15 (103090087-103090692) | |
| 1-333, gnl|rheMac2|chr7 (166259836-166260441) | |
| 1-333, gnl|rn3|chr6 (136068146-136068754) | |
| 1-333, gnl|tetNig1|chrUn_random (50562223-50561547) | |
| 1-333, gnl|xenTro1|scaffold_127 (1007776-1008381) | |
| 632-744, gnl|bosTau2|chr21 (47098700-47098588) | |
| 632-744, gnl|canFam2|chr8 (73860946-73861085) | |
| 632-744, gnl|danRer3|chr20 (18721342-18721464) | |
| 632-744, gnl|dasNov1|scaffold_107875 (7851-7720) | |
| 632-744, gnl|echTel1|scaffold_296926 (4581-4678) | |
| 632-744, gnl|fr1|chrUn (182843629-182843481) | |
| 632-744, gnl|galGal2|chr5 (46720311-46720438) | |
| 632-744, gnl|hg17|chr14 (102475682-102475826) | |
| 632-744, gnl|Hg17|chr14 (102475818-102475706) | |
| 632-744, gnl|loxAfr1|scaffold_66475 (6860-6727) | |
| 632-744, gnl|mm7|chr12 (108812141-108812283) | |
| 632-744, gnl|Mm7|chr12 (108812275-108812163) | |
| 632-744, gnl|monDom2|scaffold_6 (86975842-86975969) | |
| 632-744, gnl|oryCun1|scaffold_146799 (18837-18700) | |
| 632-744, gnl|panTro1|chr15 (103085772-103085916) | |
| 632-744, gnl|rheMac2|chr7 (166255560-166255704) | |
| 632-744, gnl|rn3|chr6 (136064816-136064958) | |
| 632-744, gnl|tetNig1|chrUn_random (50563114-50562972) | |
| 632-744, gnl|xenTro1|scaffold_127 (1004834-1004961) |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-333, gnl|bosTau2|chr21 (47101904-47101572) | |
| 1-333, gnl|canFam2|chr8 (73864326-73864931) | |
| 1-333, gnl|danRer3|chr20 (18728504-18729109) | |
| 1-333, gnl|dasNov1|scaffold_107875 (4747-4156) | |
| 1-333, gnl|echTel1|scaffold_294940 (57492-58085) | |
| 1-333, gnl|fr1|chrUn (182842564-182841831) | |
| 1-333, gnl|galGal2|chr5 (46723819-46724423) | |
| 1-333, gnl|hg17|chr14 (102479976-102480581) | |
| 1-333, gnl|Hg17|chr14 (102480311-102479979) | |
| 1-333, gnl|loxAfr1|scaffold_213449 (500-1105) | |
| 1-333, gnl|mm7|chr12 (108815496-108816104) | |
| 1-333, gnl|Mm7|chr12 (108815831-108815499) | |
| 1-333, gnl|monDom2|scaffold_6 (86986483-86987088) | |
| 1-333, gnl|oryCun1|scaffold_146799 (15951-15346) | |
| 1-333, gnl|panTro1|chr15 (103090087-103090692) | |
| 1-333, gnl|rheMac2|chr7 (166259836-166260441) | |
| 1-333, gnl|rn3|chr6 (136068146-136068754) | |
| 1-333, gnl|tetNig1|chrUn_random (50562223-50561547) | |
| 1-333, gnl|xenTro1|scaffold_127 (1007776-1008381) | |
| 632-744, gnl|bosTau2|chr21 (47098700-47098588) | |
| 632-744, gnl|canFam2|chr8 (73860946-73861085) | |
| 632-744, gnl|danRer3|chr20 (18721342-18721464) | |
| 632-744, gnl|dasNov1|scaffold_107875 (7851-7720) | |
| 632-744, gnl|echTel1|scaffold_296926 (4581-4678) | |
| 632-744, gnl|fr1|chrUn (182843629-182843481) | |
| 632-744, gnl|galGal2|chr5 (46720311-46720438) | |
| 632-744, gnl|hg17|chr14 (102475682-102475826) | |
| 632-744, gnl|Hg17|chr14 (102475818-102475706) | |
| 632-744, gnl|loxAfr1|scaffold_66475 (6860-6727) | |
| 632-744, gnl|mm7|chr12 (108812141-108812283) | |
| 632-744, gnl|Mm7|chr12 (108812275-108812163) | |
| 632-744, gnl|monDom2|scaffold_6 (86975842-86975969) | |
| 632-744, gnl|oryCun1|scaffold_146799 (18837-18700) | |
| 632-744, gnl|panTro1|chr15 (103085772-103085916) | |
| 632-744, gnl|rheMac2|chr7 (166255560-166255704) | |
| 632-744, gnl|rn3|chr6 (136064816-136064958) | |
| 632-744, gnl|tetNig1|chrUn_random (50563114-50562972) | |
| 632-744, gnl|xenTro1|scaffold_127 (1004834-1004961) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| eep (0.122564) | |
| cty (0.10408) |