Non-Coding RNA Search

Ss1.1-reep17c_e15.5

Sequence:


               
               AATCTTATGTATGTAAAACCCTGTTACGATGTCGGCGACGGGGCCCATCAGTAACTATTA
CGTGGACTCGCTCATCTCTCACGACAATGAAGACCTCCTAGCGTCCAGGTTTCCGGCCAC
GGGGGCTCACCCCGCCGCCGCCAGACCCAGCGGTTTGGTGCCGGACTGTAGCGATTTTCC
GTCCTGTAGCTTCGCGCCCAAGCCGGCCGTGTTCAGCACGTCGTGGGCGCCCGTGCCCTC
GCAGTCGTCCGTGGTCTACCACCCGTACGGCCCCCAGCCCCACCTCGGCGCCGACACGCG
CTACATGCGGACTTGGCTCGAGCCGCTGTCCGGCGCCGTCTCCTTCCCCAGCTTCCCGGC
CGGGGGCCGTCACTACGCCCTCAAGCCGGACGCCTACCCCGGGCGCCGCGCCGACTGCGG
CCCGGGCGACGGCCGCAGCTACCCGGACTACATGTACGGCTCGCCCGGGGAGCTGCGCGA
CCGCGCCCCGCAGACCCTGCCCTCGCCCGAGGCGGACGCCCTCGCCGGCAGCAAGCACAA
AGAGGAGAAGGCCGACCTGGACCCCAGCAACCCCGTGGCCAACTGGATCCACGCCCGCTC
CACAAGGAAGAAGCGCTGCCCCTACACCAAGTACCAGACGCTGGAACTGGAGAAGGAATT
TCTCTTCAATATGTATTTAACCAGGGACCGTCGGTACGGGGTGGCCCGGGTTCTCAACCT
CACCGAGCGGCAGGTCAAAATCTGGTTTCAGAACCGAAGGATGAAGATGAAAAAGATGAA
TAAAGAGAAAACCGACAAGGAGCAATCCTAAACCCTGCCCCGGCCTGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AATCTTATGTATGTAAAACCCTGTTACGATGTCGGCGACGGGGCCCATCAGTAACTATTA
CGTGGACTCGCTCATCTCTCACGACAATGAAGACCTCCTAGCGTCCAGGTTTCCGGCCAC
GGGGGCTCACCCCGCCGCCGCCAGACCCAGCGGTTTGGTGCCGGACTGTAGCGATTTTCC
GTCCTGTAGCTTCGCGCCCAAGCCGGCCGTGTTCAGCACGTCGTGGGCGCCCGTGCCCTC
GCAGTCGTCCGTGGTCTACCACCCGTACGGCCCCCAGCCCCACCTCGGCGCCGACACGCG
CTACATGCGGACTTGGCTCGAGCCGCTGTCCGGCGCCGTCTCCTTCCCCAGCTTCCCGGC
CGGGGGCCGTCACTACGCCCTCAAGCCGGACGCCTACCCCGGGCGCCGCGCCGACTGCGG
CCCGGGCGACGGCCGCAGCTACCCGGACTACATGTACGGCTCGCCCGGGGAGCTGCGCGA
CCGCGCCCCGCAGACCCTGCCCTCGCCCGAGGCGGACGCCCTCGCCGGCAGCAAGCACAA
AGAGGAGAAGGCCGACCTGGACCCCAGCAACCCCGTGGCCAACTGGATCCACGCCCGCTC
CACAAGGAAGAAGCGCTGCCCCTACACCAAGTACCAGACGCTGGAACTGGAGAAGGAATT
TCTCTTCAATATGTATTTAACCAGGGACCGTCGGTACGGGGTGGCCCGGGTTCTCAACCT
CACCGAGCGGCAGGTCAAAATCTGGTTTCAGAACCGAAGGATGAAGATGAAAAAGATGAA
TAAAGAGAAAACCGACAAGGAGCAATCCTAAACCCTGCCCCGGCCTGC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               HXC9_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               HXC9_MOUSE

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               558-828, gnl|bosTau2|chr5 (16812118-16811846)
               

               
               558-828, gnl|Hg17|chr12 (52682470-52682741)
               

               
               558-828, gnl|Mm7|chr15 (102970040-102970312)
               


               
               568-786, gnl|bosTau2|chr19 (31239666-31239448)
               

               
               568-786, gnl|Hg17|chr17 (44055495-44055277)
               

               
               568-786, gnl|Mm7|chr11 (96383664-96383882)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               558-828, gnl|bosTau2|chr5 (16812118-16811846)
               

               
               558-828, gnl|Hg17|chr12 (52682470-52682741)
               

               
               558-828, gnl|Mm7|chr15 (102970040-102970312)
               


               
               568-786, gnl|bosTau2|chr19 (31239666-31239448)
               

               
               568-786, gnl|Hg17|chr17 (44055495-44055277)
               

               
               568-786, gnl|Mm7|chr11 (96383664-96383882)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               eep (0.122564)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eep (0.122564)

	558-828, gnl\|bosTau2\|chr5 (16812118-16811846)
	558-828, gnl\|Hg17\|chr12 (52682470-52682741)
	558-828, gnl\|Mm7\|chr15 (102970040-102970312)

	568-786, gnl\|bosTau2\|chr19 (31239666-31239448)
	568-786, gnl\|Hg17\|chr17 (44055495-44055277)
	568-786, gnl\|Mm7\|chr11 (96383664-96383882)