Non-Coding RNA Search

Ss1.1-reep18c_a12.5

Sequence:


               
               GATACAAGACGTTTCTGCCTTATTTCTACGTGCAGAGTAGCTGGCTGTCCCCTGCCTGTG
CATTTGGATGTTCAAGCTCTGCCCACCTCCTAAACTGCTACTGAGAAAATCAACTTCAGC
CCTGTCAGAATGGCTCTGGCAGCAGCTCCTAATAATTATTTATGCTTTTGGAATTTTTTT
TTTTTTTTTTCAGCTCCTAAAACCATCTGTCCATTTCAGCTCCTAAAACCTTCTGTCCAA
AATCTGGTTTTCTCGATTTATACAATATATGCATATTCTCATCCCTTTTGCCACCACCCC
GCCCCAGCCCCTGACATTTTGGTTTTTTTAATGTTCTGCAGTTTTGTACGAGAAGAGACT
TAGCCTTGGGTACTTCTTGCTAAAGCTTTAATGCTTTGTAAATAAAATTGGATCTTTATT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GATACAAGACGTTTCTGCCTTATTTCTACGTGCAGAGTAGCTGGCTGTCCCCTGCCTGTG
CATTTGGATGTTCAAGCTCTGCCCACCTCCTAAACTGCTACTGAGAAAATCAACTTCAGC
CCTGTCAGAATGGCTCTGGCAGCAGCTCCTAATAATTATTTATGCTTTTGGAATTTTTTT
TTTTTTTTTTCAGCTCCTAAAACCATCTGTCCATTTCAGCTCCTAAAACCTTCTGTCCAA
AATCTGGTTTTCTCGATTTATACAATATATGCATATTCTCATCCCTTTTGCCACCACCCC
GCCCCAGCCCCTGACATTTTGGTTTTTTTAATGTTCTGCAGTTTTGTACGAGAAGAGACT
TAGCCTTGGGTACTTCTTGCTAAAGCTTTAATGCTTTGTAAATAAAATTGGATCTTTATT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               86-179, - strand, RNAz p=0.904322

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               86-179, - strand, RNAz p=0.904322

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of BC037284, -

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of BC037284, -

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               1-179, gnl|bosTau2|chr16 (3540621-3540448)
               

               
               1-179, gnl|canFam2|chr38 (4606738-4606933)
               

               
               1-179, gnl|dasNov1|scaffold_18642 (45857-45657)
               

               
               1-179, gnl|echTel1|scaffold_317622 (2674-2876)
               

               
               1-179, gnl|hg17|chr1 (201787355-201787563)
               

               
               1-179, gnl|Hg17|chr1 (201787634-201787453)
               

               
               1-179, gnl|mm7|chr1 (132406467-132406263)
               

               
               1-179, gnl|Mm7|chr1 (132406203-132406371)
               

               
               1-179, gnl|monDom2|scaffold_13 (6650648-6650872)
               

               
               1-179, gnl|oryCun1|scaffold_190174 (66724-66917)
               

               
               1-179, gnl|panTro1|chr1 (184732511-184732719)
               

               
               1-179, gnl|rheMac2|chr1 (165331775-165331573)
               

               
               1-179, gnl|rn3|chr13 (45405679-45405478)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-179, gnl|bosTau2|chr16 (3540621-3540448)
               

               
               1-179, gnl|canFam2|chr38 (4606738-4606933)
               

               
               1-179, gnl|dasNov1|scaffold_18642 (45857-45657)
               

               
               1-179, gnl|echTel1|scaffold_317622 (2674-2876)
               

               
               1-179, gnl|hg17|chr1 (201787355-201787563)
               

               
               1-179, gnl|Hg17|chr1 (201787634-201787453)
               

               
               1-179, gnl|mm7|chr1 (132406467-132406263)
               

               
               1-179, gnl|Mm7|chr1 (132406203-132406371)
               

               
               1-179, gnl|monDom2|scaffold_13 (6650648-6650872)
               

               
               1-179, gnl|oryCun1|scaffold_190174 (66724-66917)
               

               
               1-179, gnl|panTro1|chr1 (184732511-184732719)
               

               
               1-179, gnl|rheMac2|chr1 (165331775-165331573)
               

               
               1-179, gnl|rn3|chr13 (45405679-45405478)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               fcc (0.197785)
               

               
               fco (0.157208)
               

               
               eep (0.122564)
               

               
               ecc (0.115035)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fcc (0.197785)
               

               
               fco (0.157208)
               

               
               eep (0.122564)
               

               
               ecc (0.115035)

	1-179, gnl\|bosTau2\|chr16 (3540621-3540448)
	1-179, gnl\|canFam2\|chr38 (4606738-4606933)
	1-179, gnl\|dasNov1\|scaffold_18642 (45857-45657)
	1-179, gnl\|echTel1\|scaffold_317622 (2674-2876)
	1-179, gnl\|hg17\|chr1 (201787355-201787563)
	1-179, gnl\|Hg17\|chr1 (201787634-201787453)
	1-179, gnl\|mm7\|chr1 (132406467-132406263)
	1-179, gnl\|Mm7\|chr1 (132406203-132406371)
	1-179, gnl\|monDom2\|scaffold_13 (6650648-6650872)
	1-179, gnl\|oryCun1\|scaffold_190174 (66724-66917)
	1-179, gnl\|panTro1\|chr1 (184732511-184732719)
	1-179, gnl\|rheMac2\|chr1 (165331775-165331573)
	1-179, gnl\|rn3\|chr13 (45405679-45405478)