Non-Coding RNA Search

Ss1.1-reep18c_b3.5

Sequence:


               
               CCGGGACTTCCTGGACCCAAAGGATCGGTTGGCGGCATGGGCCTGCCAGGAACCCCCGGA
GAAAAAGGTGTGCCTGGCATCCCCGGCCCTCAGGGCGTCCCCGGCTTACCTGGAGAGAAG
GGAGCAAAAGGAGAGAAAGGACAGGCGGGCCTACCTGGCATCGGGATTCCAGGAAGGCCT
GGCGACAAGGGAGACCAAGGCCTGGCGGGCTTCCCGGGAAGCCCTGGAGAGAAGGGAGAG
AAGGGGAGCTCAGGGATCCCGGGGCTGCCCGGTTCTCCGGGCCCCAAGGGCTCACCTGGG
AGTGTAGGCTATCCAGGAAGCCCCGGGTCGCCTGGAGAAAAAGGCGACAAAGGGCTCCCG
GGACTGGATGGCGCCCCCGGCAGCAAAGGAGAAGCAGGTCTTCCTGGGAAGCCTGGCCCC
ACCGGCCCCGCGGGCCAGAAGGGGGAGCCCGGCAGCGACGGGATCCCAGGGTCGGCAGGA
GAGAAGGGTGAACCAGGTCTGCCCGGAAGAGGATTCCCAGGGGTTTCCAGGGACCAAAGG
AGAGAAAGGTTCAAAGGGTGACGTGGGCTTCCCAGGCTTAGCCGGGAGCCCAGGAATTCC
TGGATCCAAAGGAGAGCAAGGATTCATGGGGCCTCCGGGGCCGCAGGGACAGCCGGGATT
GCCGGGGATTCCAGGCCACGCCGTGGAGGGACCCAAAGGAGATCGCGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCGGGACTTCCTGGACCCAAAGGATCGGTTGGCGGCATGGGCCTGCCAGGAACCCCCGGA
GAAAAAGGTGTGCCTGGCATCCCCGGCCCTCAGGGCGTCCCCGGCTTACCTGGAGAGAAG
GGAGCAAAAGGAGAGAAAGGACAGGCGGGCCTACCTGGCATCGGGATTCCAGGAAGGCCT
GGCGACAAGGGAGACCAAGGCCTGGCGGGCTTCCCGGGAAGCCCTGGAGAGAAGGGAGAG
AAGGGGAGCTCAGGGATCCCGGGGCTGCCCGGTTCTCCGGGCCCCAAGGGCTCACCTGGG
AGTGTAGGCTATCCAGGAAGCCCCGGGTCGCCTGGAGAAAAAGGCGACAAAGGGCTCCCG
GGACTGGATGGCGCCCCCGGCAGCAAAGGAGAAGCAGGTCTTCCTGGGAAGCCTGGCCCC
ACCGGCCCCGCGGGCCAGAAGGGGGAGCCCGGCAGCGACGGGATCCCAGGGTCGGCAGGA
GAGAAGGGTGAACCAGGTCTGCCCGGAAGAGGATTCCCAGGGGTTTCCAGGGACCAAAGG
AGAGAAAGGTTCAAAGGGTGACGTGGGCTTCCCAGGCTTAGCCGGGAGCCCAGGAATTCC
TGGATCCAAAGGAGAGCAAGGATTCATGGGGCCTCCGGGGCCGCAGGGACAGCCGGGATT
GCCGGGGATTCCAGGCCACGCCGTGGAGGGACCCAAAGGAGATCGCGG

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               48-190, + strand, RNAz p=0.887491
               

               
               547-708, + strand, RNAz p=0.953998

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               48-190, + strand, RNAz p=0.887491
               

               
               547-708, + strand, RNAz p=0.953998

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               67-179, + strand, RNAmicro p=0.971752
               

               
               566-654, + strand, RNAmicro p=0.949545

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               67-179, + strand, RNAmicro p=0.971752
               

               
               566-654, + strand, RNAmicro p=0.949545

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               48-190, gnl|bosTau2|chr12 (46528311-46528453)
               

               
               48-190, gnl|Hg17|chr13 (109625707-109625565)
               

               
               48-190, gnl|Mm7|chr8 (11186065-11185923)
               


               
               547-708, gnl|bosTau2|chr12 (46532277-46532438)
               

               
               547-708, gnl|Hg17|chr13 (109621082-109620921)
               

               
               547-708, gnl|Mm7|chr8 (11181702-11181541)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               48-190, gnl|bosTau2|chr12 (46528311-46528453)
               

               
               48-190, gnl|Hg17|chr13 (109625707-109625565)
               

               
               48-190, gnl|Mm7|chr8 (11186065-11185923)
               


               
               547-708, gnl|bosTau2|chr12 (46532277-46532438)
               

               
               547-708, gnl|Hg17|chr13 (109621082-109620921)
               

               
               547-708, gnl|Mm7|chr8 (11181702-11181541)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               eep (0.490256)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eep (0.490256)

	48-190, + strand, RNAz p=0.887491
	547-708, + strand, RNAz p=0.953998

	67-179, + strand, RNAmicro p=0.971752
	566-654, + strand, RNAmicro p=0.949545

	48-190, gnl\|bosTau2\|chr12 (46528311-46528453)
	48-190, gnl\|Hg17\|chr13 (109625707-109625565)
	48-190, gnl\|Mm7\|chr8 (11186065-11185923)

	547-708, gnl\|bosTau2\|chr12 (46532277-46532438)
	547-708, gnl\|Hg17\|chr13 (109621082-109620921)
	547-708, gnl\|Mm7\|chr8 (11181702-11181541)