Non-Coding RNA Search

Ss1.1-reep18c_l19.5

Sequence:


               
               TTTTTTTTTGCCCATTTTTTAAACTAACTTTGAAAATATTTACTTAAGGGTAGCATGTTT
CTTTTAAATTTACTGAAAGCTTAACTTGTGCCACTTGCATAATTGAAAGAGTATACTTTT
TTCTCTTTTCCTTTCCCATTTTCCTTGGTTTCTAGAGTTTACAAGCCCTGATGAATGAAT
GCATTGGCCACGTAATAGGAAAGCCGCACAGCCCTATTACAGGTCTGTACCTTGGTAAGA
CAGCAGTTACAGTGCTTCTCCTAGAACACACTGGTTTGGGTGAGCACCTTGTCTTGTGAT
TACAGTCATTTAAAATGGCATGCGAGTTCTTTAGGAAGAATGACCGCCTGGCTTCCGTAG
CAGCCGAGTTGCAGTTCAGGTCCCTGAGCCGGCACTCCAGCCCCACCGAGGAGCGAGACG
AACCAGCATATCCAAAAGGTGATTCAAGTGGGTCAACTCGAAGAAGCTGGGAACTTCGGA
CGCTGATCAGCCAGACCAAGGGTATCCCCTCCTAAAACTCTTTTCTTCTGGGGAAGAAAG
CGTGAGCCGCTCCAGCGAAGATGTGTTTTAGCGTCTGAATTACTAGGGCTTTCGCGTGAA
TGAATGTCTTGCAGGCTCTTTTATACCGCTGGCGTCTTCTGTCCCTGCTTGTGTGTGTAC
AGTTCCTATTTCTTCCAATTAAAAGATCCTTCGGATCAGAGACATGTTTTACCCGCTTGC
GTGTTTTTCAAGCGGTATGACGGGTAACTAACTGTATGTCACCTGGGCAGGCCCTTATTT
AGCGTGATTCGTTGTATGTGGTAAGAATGTGATAAATATTTGTGAATTGATTCGTAAGAT
CCCCACGACAGTGGGCTTTTAGAAGAAGACTGGAGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTTTGCCCATTTTTTAAACTAACTTTGAAAATATTTACTTAAGGGTAGCATGTTT
CTTTTAAATTTACTGAAAGCTTAACTTGTGCCACTTGCATAATTGAAAGAGTATACTTTT
TTCTCTTTTCCTTTCCCATTTTCCTTGGTTTCTAGAGTTTACAAGCCCTGATGAATGAAT
GCATTGGCCACGTAATAGGAAAGCCGCACAGCCCTATTACAGGTCTGTACCTTGGTAAGA
CAGCAGTTACAGTGCTTCTCCTAGAACACACTGGTTTGGGTGAGCACCTTGTCTTGTGAT
TACAGTCATTTAAAATGGCATGCGAGTTCTTTAGGAAGAATGACCGCCTGGCTTCCGTAG
CAGCCGAGTTGCAGTTCAGGTCCCTGAGCCGGCACTCCAGCCCCACCGAGGAGCGAGACG
AACCAGCATATCCAAAAGGTGATTCAAGTGGGTCAACTCGAAGAAGCTGGGAACTTCGGA
CGCTGATCAGCCAGACCAAGGGTATCCCCTCCTAAAACTCTTTTCTTCTGGGGAAGAAAG
CGTGAGCCGCTCCAGCGAAGATGTGTTTTAGCGTCTGAATTACTAGGGCTTTCGCGTGAA
TGAATGTCTTGCAGGCTCTTTTATACCGCTGGCGTCTTCTGTCCCTGCTTGTGTGTGTAC
AGTTCCTATTTCTTCCAATTAAAAGATCCTTCGGATCAGAGACATGTTTTACCCGCTTGC
GTGTTTTTCAAGCGGTATGACGGGTAACTAACTGTATGTCACCTGGGCAGGCCCTTATTT
AGCGTGATTCGTTGTATGTGGTAAGAATGTGATAAATATTTGTGAATTGATTCGTAAGAT
CCCCACGACAGTGGGCTTTTAGAAGAAGACTGGAGG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               420-538, - strand, RNAz p=0.9571

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               420-538, - strand, RNAz p=0.9571

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               19-267, gnl|bosTau2|chr9 (58880192-58880445)
               

               
               19-267, gnl|Hg17|chr6 (161485086-161485328)
               


               
               420-802, gnl|bosTau2|chr9 (58889629-58889996)
               

               
               420-802, gnl|Hg17|chr6 (161494141-161494489)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               19-267, gnl|bosTau2|chr9 (58880192-58880445)
               

               
               19-267, gnl|Hg17|chr6 (161485086-161485328)
               


               
               420-802, gnl|bosTau2|chr9 (58889629-58889996)
               

               
               420-802, gnl|Hg17|chr6 (161494141-161494489)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               eep (0.122564)
               

               
               cty (0.10408)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eep (0.122564)
               

               
               cty (0.10408)

	19-267, gnl\|bosTau2\|chr9 (58880192-58880445)
	19-267, gnl\|Hg17\|chr6 (161485086-161485328)

	420-802, gnl\|bosTau2\|chr9 (58889629-58889996)
	420-802, gnl\|Hg17\|chr6 (161494141-161494489)