Ss1.1-reep18c_o2.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTCGCTGGAGTAGTGGCGCTGCTGTTTCCTCCGGATCTACATCAAGTATTGAGAAGAAAG AACATCAAGAGCTAAGTGTCCTATTTAAACCAGTAGTTGCTGCTCAGAAAATAAAGATGC AGACCCAGAATCAGTGGTTTATCCATTCTTCATGCAAGACCACTGTATTAAAGGAGAGAA GTAAGCTGTGTTGATCATCGACTTTGGTGAAGGCTGAGAAAGTTGAAGCGAATTTGCAGA TGATAAACAACATCTAAGCATTCCATATTGGAAGAAGAGATTTCTATAGATAAAAAAAAT GCCTTTGTTTAGTAAATCACAGAAAAATCCAGCGGAAATTGTGAAAATTCTGAAAGACAA CATGGCCATTTTGGAAAAGCAAGACAAAAAGACAGATAAGGCTTCAGAAGAAGTGTCAAA ATCACTGCAAGCAATGAAAGAAATTCTGTGTGGGACAAATGACAAGGAACCCCCTACAGA AGCCGTGGCTCAGCTAGCACAAGAACTCTACAATAGTGGGCTGCTGGTGACACTCATAGC CGACCTACAGCTCATAGACTTTGAGGGGAAAAAAGACGTGACCCAGATATTTAACAACAT CCTGAGAAGACAGATAGGCACTCGGAGTCCTACCGTGGAGTACATTAGCGCTCATCCTCA CATCCTGTTTATGCTCCTCAAAGGATATGAAGCCCCACAGATTGCCTTACGCTGTGGGAT TATGCTGAGAGAATGTATTCGACATGAACCTCTTGCCAAAACCATCCTCTTTTCTAATCA GTTCAGAGATTTCTTTAAATACGTGGAGTTGTCAACATTTGATATTGCTTCCGATGCCTT TGCTACTTTTAAGGATTTACTAACCAGACATAAAGTGTTGGTAGCAGACTTCTTAGAACA AAATTATGACACTATTTTTGAAGACTATGAGAAGTTACTCCAGTCTGAGAATTATGTGAC TAAGAGGCAGTCTTTAAAGCTGCTTGGTGAACTGATCCTGGACCGGCACAACTTTGCCAT CATGACAAAGTACATCAGCAAGCCGGAGAACCTCAAACTGATGATGAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTCGCTGGAGTAGTGGCGCTGCTGTTTCCTCCGGATCTACATCAAGTATTGAGAAGAAAG AACATCAAGAGCTAAGTGTCCTATTTAAACCAGTAGTTGCTGCTCAGAAAATAAAGATGC AGACCCAGAATCAGTGGTTTATCCATTCTTCATGCAAGACCACTGTATTAAAGGAGAGAA GTAAGCTGTGTTGATCATCGACTTTGGTGAAGGCTGAGAAAGTTGAAGCGAATTTGCAGA TGATAAACAACATCTAAGCATTCCATATTGGAAGAAGAGATTTCTATAGATAAAAAAAAT GCCTTTGTTTAGTAAATCACAGAAAAATCCAGCGGAAATTGTGAAAATTCTGAAAGACAA CATGGCCATTTTGGAAAAGCAAGACAAAAAGACAGATAAGGCTTCAGAAGAAGTGTCAAA ATCACTGCAAGCAATGAAAGAAATTCTGTGTGGGACAAATGACAAGGAACCCCCTACAGA AGCCGTGGCTCAGCTAGCACAAGAACTCTACAATAGTGGGCTGCTGGTGACACTCATAGC CGACCTACAGCTCATAGACTTTGAGGGGAAAAAAGACGTGACCCAGATATTTAACAACAT CCTGAGAAGACAGATAGGCACTCGGAGTCCTACCGTGGAGTACATTAGCGCTCATCCTCA CATCCTGTTTATGCTCCTCAAAGGATATGAAGCCCCACAGATTGCCTTACGCTGTGGGAT TATGCTGAGAGAATGTATTCGACATGAACCTCTTGCCAAAACCATCCTCTTTTCTAATCA GTTCAGAGATTTCTTTAAATACGTGGAGTTGTCAACATTTGATATTGCTTCCGATGCCTT TGCTACTTTTAAGGATTTACTAACCAGACATAAAGTGTTGGTAGCAGACTTCTTAGAACA AAATTATGACACTATTTTTGAAGACTATGAGAAGTTACTCCAGTCTGAGAATTATGTGAC TAAGAGGCAGTCTTTAAAGCTGCTTGGTGAACTGATCCTGGACCGGCACAACTTTGCCAT CATGACAAAGTACATCAGCAAGCCGGAGAACCTCAAACTGATGATGAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 725-844, + strand, RNAz p=0.698133 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 725-844, + strand, RNAz p=0.698133 |
| Aligned organism(s): 41 entry(ies) | More info |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
| 52-182, gnl|bosTau2|chr3 (34561688-34561554) | |
| 52-182, gnl|Hg17|chr2 (187190458-187191571) | |
| 52-182, gnl|Mm7|chr8 (78651568-78651435) | |
| 257-401, gnl|bosTau2|chr14 (43210015-43209876) | |
| 257-401, gnl|hg17|chr8 (96293123-96293629) | |
| 257-401, gnl|Mm7|chr14 (54365308-54365452) | |
| 257-401, gnl|mm7|chr4 (10860415-10859884) | |
| 257-401, gnl|rheMac2|chr8 (97785770-97786273) | |
| 257-401, gnl|rn3|chr5 (24780839-24780359) | |
| 686-854, gnl|bosTau2|chr2 (73331909-73331741) | |
| 686-854, gnl|canFam2|chr25 (45782247-45782435) | |
| 686-854, gnl|canFam2|chr25 (45782268-45782377) | |
| 686-854, gnl|danRer3|chr20 (17485288-17485476) | |
| 686-854, gnl|danRer3|chr20 (17485309-17485418) | |
| 686-854, gnl|dasNov1|scaffold_1403 (46595-46407) | |
| 686-854, gnl|dasNov1|scaffold_1403 (46571-46465) | |
| 686-854, gnl|echTel1|scaffold_88935 (1862-1674) | |
| 686-854, gnl|echTel1|scaffold_88935 (1837-1732) | |
| 686-854, gnl|fr1|chrUn (219703918-219704099) | |
| 686-854, gnl|fr1|chrUn (219703932-219704041) | |
| 686-854, gnl|galGal2|chr9 (8225825-8226013) | |
| 686-854, gnl|hg17|chr2 (231488934-231489122) | |
| 686-854, gnl|Hg17|chr2 (231488950-231489118) | |
| 686-854, gnl|hg17|chr5 (59962454-59962562) | |
| 686-854, gnl|loxAfr1|scaffold_12976 (9400-9212) | |
| 686-854, gnl|loxAfr1|scaffold_12976 (9375-9270) | |
| 686-854, gnl|mm7|chr1 (85742907-85743092) | |
| 686-854, gnl|Mm7|chr1 (85742920-85743088) | |
| 686-854, gnl|mm7|chr7 (3735002-3734895) | |
| 686-854, gnl|monDom2|scaffold_174 (878751-878563) | |
| 686-854, gnl|oryCun1|scaffold_173918 (14148-14328) | |
| 686-854, gnl|oryCun1|scaffold_173918 (14161-14270) | |
| 686-854, gnl|panTro1|chr13 (122118272-122118460) | |
| 686-854, gnl|panTro1|chr4 (55991282-55991174) | |
| 686-854, gnl|rheMac2|chr12 (94656876-94657064) | |
| 686-854, gnl|rheMac2|chr6 (58332143-58332251) | |
| 686-854, gnl|rn3|chr16 (70352807-70352721) | |
| 686-854, gnl|rn3|chr9 (84763865-84764056) | |
| 686-854, gnl|tetNig1|chr16 (7673689-7673870) | |
| 686-854, gnl|tetNig1|chr16 (7673703-7673812) | |
| 686-854, gnl|xenTro1|scaffold_108 (1500186-1500374) |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 52-182, gnl|bosTau2|chr3 (34561688-34561554) | |
| 52-182, gnl|Hg17|chr2 (187190458-187191571) | |
| 52-182, gnl|Mm7|chr8 (78651568-78651435) | |
| 257-401, gnl|bosTau2|chr14 (43210015-43209876) | |
| 257-401, gnl|hg17|chr8 (96293123-96293629) | |
| 257-401, gnl|Mm7|chr14 (54365308-54365452) | |
| 257-401, gnl|mm7|chr4 (10860415-10859884) | |
| 257-401, gnl|rheMac2|chr8 (97785770-97786273) | |
| 257-401, gnl|rn3|chr5 (24780839-24780359) | |
| 686-854, gnl|bosTau2|chr2 (73331909-73331741) | |
| 686-854, gnl|canFam2|chr25 (45782247-45782435) | |
| 686-854, gnl|canFam2|chr25 (45782268-45782377) | |
| 686-854, gnl|danRer3|chr20 (17485288-17485476) | |
| 686-854, gnl|danRer3|chr20 (17485309-17485418) | |
| 686-854, gnl|dasNov1|scaffold_1403 (46595-46407) | |
| 686-854, gnl|dasNov1|scaffold_1403 (46571-46465) | |
| 686-854, gnl|echTel1|scaffold_88935 (1862-1674) | |
| 686-854, gnl|echTel1|scaffold_88935 (1837-1732) | |
| 686-854, gnl|fr1|chrUn (219703918-219704099) | |
| 686-854, gnl|fr1|chrUn (219703932-219704041) | |
| 686-854, gnl|galGal2|chr9 (8225825-8226013) | |
| 686-854, gnl|hg17|chr2 (231488934-231489122) | |
| 686-854, gnl|Hg17|chr2 (231488950-231489118) | |
| 686-854, gnl|hg17|chr5 (59962454-59962562) | |
| 686-854, gnl|loxAfr1|scaffold_12976 (9400-9212) | |
| 686-854, gnl|loxAfr1|scaffold_12976 (9375-9270) | |
| 686-854, gnl|mm7|chr1 (85742907-85743092) | |
| 686-854, gnl|Mm7|chr1 (85742920-85743088) | |
| 686-854, gnl|mm7|chr7 (3735002-3734895) | |
| 686-854, gnl|monDom2|scaffold_174 (878751-878563) | |
| 686-854, gnl|oryCun1|scaffold_173918 (14148-14328) | |
| 686-854, gnl|oryCun1|scaffold_173918 (14161-14270) | |
| 686-854, gnl|panTro1|chr13 (122118272-122118460) | |
| 686-854, gnl|panTro1|chr4 (55991282-55991174) | |
| 686-854, gnl|rheMac2|chr12 (94656876-94657064) | |
| 686-854, gnl|rheMac2|chr6 (58332143-58332251) | |
| 686-854, gnl|rn3|chr16 (70352807-70352721) | |
| 686-854, gnl|rn3|chr9 (84763865-84764056) | |
| 686-854, gnl|tetNig1|chr16 (7673689-7673870) | |
| 686-854, gnl|tetNig1|chr16 (7673703-7673812) | |
| 686-854, gnl|xenTro1|scaffold_108 (1500186-1500374) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| sto (0.179824) | |
| eep (0.122564) |