Non-Coding RNA Search

Ss1.1-reep20c_a21.5

Sequence:


               
               CACCGCCCCCCTCTGGCCCCTCCACAGCTGCCACAGGCAGGTGAGGGGCCCCTAGAAGAT
CCCAGACTCACAGTACCCCCTCAGGACACGGACAGTATGTAGGTGGCAGGAATGGGGGGA
GGCAGGTTGGTTACCTGCTCCCCAGTAAAGCCATTTCGTCCTTTCCAGTTTGGGGCGGAA
TGAGGCCTGCTCCTCTTGTCTATCTCCCTCCCCCCACAGCTCCCTCCCTGTGATGGGGGG
CAGCTGAGGGGAAGCAGGCGCAGAGTCTCCCTCCACCGAGCCCCTGTACATAACCTGGAG
CGTGTTACGTTCAGAACTTTTCACTTGTATTTTATGCAAAATGGCTCGTGTGAGGGCTGC
AAGCTGGAGGGTAGTGCAGGCCTCGGGCCACAGGGAGGCGCCTGTGGAGTAGGGGAGTTC
ATGTACCCCTTTTTTCCCCAGAGGGGCTGGACTCAGGTTAGTTTGGGGGTGGGGGGCTCC
TGCACTTTGCCACAGGCAGGGGGAGGGTTCTCTCCCCACCCCCTCTGCCCTCCCAACTTG
GGTTGTACTTTCTAAGAAGGTGATTCCCCCTACCCTTGTCCCCATCCCCAGAACAAAACA
TGTTGATCATGTGCAATATTTCTTACTGTGCCGAGAAGCCGCAATGAACGAGATTAAAGC
TGTTTAACACAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CACCGCCCCCCTCTGGCCCCTCCACAGCTGCCACAGGCAGGTGAGGGGCCCCTAGAAGAT
CCCAGACTCACAGTACCCCCTCAGGACACGGACAGTATGTAGGTGGCAGGAATGGGGGGA
GGCAGGTTGGTTACCTGCTCCCCAGTAAAGCCATTTCGTCCTTTCCAGTTTGGGGCGGAA
TGAGGCCTGCTCCTCTTGTCTATCTCCCTCCCCCCACAGCTCCCTCCCTGTGATGGGGGG
CAGCTGAGGGGAAGCAGGCGCAGAGTCTCCCTCCACCGAGCCCCTGTACATAACCTGGAG
CGTGTTACGTTCAGAACTTTTCACTTGTATTTTATGCAAAATGGCTCGTGTGAGGGCTGC
AAGCTGGAGGGTAGTGCAGGCCTCGGGCCACAGGGAGGCGCCTGTGGAGTAGGGGAGTTC
ATGTACCCCTTTTTTCCCCAGAGGGGCTGGACTCAGGTTAGTTTGGGGGTGGGGGGCTCC
TGCACTTTGCCACAGGCAGGGGGAGGGTTCTCTCCCCACCCCCTCTGCCCTCCCAACTTG
GGTTGTACTTTCTAAGAAGGTGATTCCCCCTACCCTTGTCCCCATCCCCAGAACAAAACA
TGTTGATCATGTGCAATATTTCTTACTGTGCCGAGAAGCCGCAATGAACGAGATTAAAGC
TGTTTAACACAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               335-608, + strand, RNAz p=0.991788

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               335-608, + strand, RNAz p=0.991788

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               530-624, + strand, RNAmicro p=0.999944
               

               
               245-471, + strand, RNAmicro p=0.973992

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               530-624, + strand, RNAmicro p=0.999944
               

               
               245-471, + strand, RNAmicro p=0.973992

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_015125, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_015125, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               10-671, gnl|bosTau2|chr18 (45006539-45007197)
               

               
               10-671, gnl|Hg17|chr19 (47491088-47491788)
               

               
               10-671, gnl|Mm7|chr7 (22081909-22082553)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               10-671, gnl|bosTau2|chr18 (45006539-45007197)
               

               
               10-671, gnl|Hg17|chr19 (47491088-47491788)
               

               
               10-671, gnl|Mm7|chr7 (22081909-22082553)

Expressed library(ies): 10 entry(ies)

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Expressed library(ies): 10 entry(ies)

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               fce (0.543183)
               

               
               nca (0.410621)
               

               
               jej (0.296765)
               

               
               ece (0.229305)
               

               
               nlu (0.191681)
               

               
               fbs (0.175346)
               

               
               fhi (0.169578)
               

               
               eep (0.122564)
               

               
               ebs (0.118301)
               

               
               jca (0.11396)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (0.543183)
               

               
               nca (0.410621)
               

               
               jej (0.296765)
               

               
               ece (0.229305)
               

               
               nlu (0.191681)
               

               
               fbs (0.175346)
               

               
               fhi (0.169578)
               

               
               eep (0.122564)
               

               
               ebs (0.118301)
               

               
               jca (0.11396)

	530-624, + strand, RNAmicro p=0.999944
	245-471, + strand, RNAmicro p=0.973992

	10-671, gnl\|bosTau2\|chr18 (45006539-45007197)
	10-671, gnl\|Hg17\|chr19 (47491088-47491788)
	10-671, gnl\|Mm7\|chr7 (22081909-22082553)

	fce (0.543183)
	nca (0.410621)
	jej (0.296765)
	ece (0.229305)
	nlu (0.191681)
	fbs (0.175346)
	fhi (0.169578)
	eep (0.122564)
	ebs (0.118301)
	jca (0.11396)