Non-Coding RNA Search

Ss1.1-reep20c_e19.5

Sequence:


               
               CGAGTGTTATTTTTTTTTTTTTAAATCATTGTTTTGGTCTCCTTTCCTTTGGAGATAAAA
CTCTTAAAAATTTACTATATAAATTTATATATATATAGAAATCTCAAATCCATTTCGGCC
TCCTCCTTTTACCAGGAAGTATCTTGTGACTGAGGGCCCCACTCTGGCAGGTCTTGCACG
CCCCTCCCCTCCCCAGAACTGCAGAGCTATAGGATGGTGAAGGTCACCCAAGGGCACCAG
CTGGGCGTGGCATCTCCAGCCCCAGGCTCTCGGCACTGTTCAGCTTTCCTTGCGTTGCTT
TGTAGCCCACCACTCACAGTGCCTCTGAAGTGTTTCCTCTGGAGTGACATGAGCGTTGGA
GGCTTGTCTAAGGAGAAAATTGGAAAAAGGCAGTGAAGGAGACTGTACATAAAGACATGG
CAAAAATCTTAATTATAGCAATATAGTTATGGGGTAATGTTCGGGTGGGCAGCTCCATTT
AAAAAAAAAATATGTGAATGAATCTGTGAAGCTGCGAGTAGCAAGAAGAGCGAAAGGTCT
TCTTAACGAACCGCCTACCTTGTAGACAGTAATTTGTACACTGTATAGTTTGGTTAAGAA
TTTTTTTTTTAAATTAAAATTCCCATGTTTGTAAAGCTAACTTTTTAACAATTATAATGG
AACTATATGTTGTTTCCATTTTTAAAGTAAACAAGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGAGTGTTATTTTTTTTTTTTTAAATCATTGTTTTGGTCTCCTTTCCTTTGGAGATAAAA
CTCTTAAAAATTTACTATATAAATTTATATATATATAGAAATCTCAAATCCATTTCGGCC
TCCTCCTTTTACCAGGAAGTATCTTGTGACTGAGGGCCCCACTCTGGCAGGTCTTGCACG
CCCCTCCCCTCCCCAGAACTGCAGAGCTATAGGATGGTGAAGGTCACCCAAGGGCACCAG
CTGGGCGTGGCATCTCCAGCCCCAGGCTCTCGGCACTGTTCAGCTTTCCTTGCGTTGCTT
TGTAGCCCACCACTCACAGTGCCTCTGAAGTGTTTCCTCTGGAGTGACATGAGCGTTGGA
GGCTTGTCTAAGGAGAAAATTGGAAAAAGGCAGTGAAGGAGACTGTACATAAAGACATGG
CAAAAATCTTAATTATAGCAATATAGTTATGGGGTAATGTTCGGGTGGGCAGCTCCATTT
AAAAAAAAAATATGTGAATGAATCTGTGAAGCTGCGAGTAGCAAGAAGAGCGAAAGGTCT
TCTTAACGAACCGCCTACCTTGTAGACAGTAATTTGTACACTGTATAGTTTGGTTAAGAA
TTTTTTTTTTAAATTAAAATTCCCATGTTTGTAAAGCTAACTTTTTAACAATTATAATGG
AACTATATGTTGTTTCCATTTTTAAAGTAAACAAGA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               389-668, - strand, RNAz p=0.907725

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               389-668, - strand, RNAz p=0.907725

Predicted microRNA(s): 3 entry(ies)

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Predicted microRNA(s): 3 entry(ies)

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               423-501, + strand, RNAmicro p=0.99594
               

               
               515-611, + strand, RNAmicro p=0.909286
               

               
               300-443, - strand, RNAmicro p=0.907557

Predicted microRNA(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               423-501, + strand, RNAmicro p=0.99594
               

               
               515-611, + strand, RNAmicro p=0.909286
               

               
               300-443, - strand, RNAmicro p=0.907557

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               15-696, gnl|bosTau2|chr6 (66610995-66610324)
               

               
               15-696, gnl|Hg17|chr9 (14074878-14074211)
               

               
               15-696, gnl|Mm7|chr4 (81697008-81696326)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               15-696, gnl|bosTau2|chr6 (66610995-66610324)
               

               
               15-696, gnl|Hg17|chr9 (14074878-14074211)
               

               
               15-696, gnl|Mm7|chr4 (81697008-81696326)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               mas (0.210305)
               

               
               eep (0.122564)
               

               
               ebs (0.118301)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mas (0.210305)
               

               
               eep (0.122564)
               

               
               ebs (0.118301)

	423-501, + strand, RNAmicro p=0.99594
	515-611, + strand, RNAmicro p=0.909286
	300-443, - strand, RNAmicro p=0.907557

	15-696, gnl\|bosTau2\|chr6 (66610995-66610324)
	15-696, gnl\|Hg17\|chr9 (14074878-14074211)
	15-696, gnl\|Mm7\|chr4 (81697008-81696326)