Ss1.1-reep20c_h18.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCTGCTGCGCGAGCCCGTCTACAACTGGCAGGCCACCAAGCCCACGGTGAAGGAGCGCTT CGCCTTCCTCTTCAACAACGAGGTGCTCTGCGACGTGCACTTCCTGGTGGGCAAGGGGCT CGGCGCGCAGCGCATCCCGGCGCACAGGTTTGTGCTGGCCGTGGGCAGTGCTGTCTTTGA TGCCATGTTCAATGGAGGAATGGCCACCACGTCCACTGAGATCGAATTGCCCGACGTGGA GCCGGCTGCCTTCCTAGCGCTGCTCAAGTTTCTGTACTCGGATGAGGTGCAGATCGGGCC CGAGACGGTCATGACCACTCTGTACACCGCCAAGAAGTACGCGGTGCCGGCACTCGAGGC CCACTGCGTGGAGTTCCTGAAGAAGAATCTGAGGGCTGACAATGCGTTCATGCTGCTCAC ACAGGCGAGGCTCTTCGATGAGCCGCAGCTCGCCAGCCTGTGCCTGGAGAACATTGACAA GAACACGGCTGACGCCATCACGGCGGAGGGCTTTACTGACATTGACCTAGACACGCTGGT GGCCGTGCTGGAGCGGGACACCCTGGGCATCCGGGAGGTGCGTCTGTTCAATGCCGTGGT CCGCTGGTCCGAGGCTGAGTGTCAGCGGCAGCAGCTGCAGGTGACGCCTGAGAACAAGCG GAAGGTTCTGGGCAAGGCGCTGGCCCTCATCCGCTTCCCGCTGATGACCATCGAGGAGTT TGCTGCAGGGCCCGCGCAGTCGGGCATCCTCGTGGACCGCGAGGTGGTCAGCCTCTTCCT GCACTTCACCGTCAACCCCAAGCCCCGCGTGGACTTCATTGATCGGCCACGCTGCTGCCT CCGCGGGAAGGAGTGCAGCATCAACCGCTTCCAGCAGGTGGAGAGCCGCTGGGGCTATAG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCTGCTGCGCGAGCCCGTCTACAACTGGCAGGCCACCAAGCCCACGGTGAAGGAGCGCTT CGCCTTCCTCTTCAACAACGAGGTGCTCTGCGACGTGCACTTCCTGGTGGGCAAGGGGCT CGGCGCGCAGCGCATCCCGGCGCACAGGTTTGTGCTGGCCGTGGGCAGTGCTGTCTTTGA TGCCATGTTCAATGGAGGAATGGCCACCACGTCCACTGAGATCGAATTGCCCGACGTGGA GCCGGCTGCCTTCCTAGCGCTGCTCAAGTTTCTGTACTCGGATGAGGTGCAGATCGGGCC CGAGACGGTCATGACCACTCTGTACACCGCCAAGAAGTACGCGGTGCCGGCACTCGAGGC CCACTGCGTGGAGTTCCTGAAGAAGAATCTGAGGGCTGACAATGCGTTCATGCTGCTCAC ACAGGCGAGGCTCTTCGATGAGCCGCAGCTCGCCAGCCTGTGCCTGGAGAACATTGACAA GAACACGGCTGACGCCATCACGGCGGAGGGCTTTACTGACATTGACCTAGACACGCTGGT GGCCGTGCTGGAGCGGGACACCCTGGGCATCCGGGAGGTGCGTCTGTTCAATGCCGTGGT CCGCTGGTCCGAGGCTGAGTGTCAGCGGCAGCAGCTGCAGGTGACGCCTGAGAACAAGCG GAAGGTTCTGGGCAAGGCGCTGGCCCTCATCCGCTTCCCGCTGATGACCATCGAGGAGTT TGCTGCAGGGCCCGCGCAGTCGGGCATCCTCGTGGACCGCGAGGTGGTCAGCCTCTTCCT GCACTTCACCGTCAACCCCAAGCCCCGCGTGGACTTCATTGATCGGCCACGCTGCTGCCT CCGCGGGAAGGAGTGCAGCATCAACCGCTTCCAGCAGGTGGAGAGCCGCTGGGGCTATAG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 381-500, - strand, RNAz p=0.904908 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 381-500, - strand, RNAz p=0.904908 |
| Aligned organism(s): 71 entry(ies) | More info |
| Aligned organism(s): 71 entry(ies) | Help | Less info |
| 47-149, gnl|bosTau2|chr7 (28064983-28065085) | |
| 47-149, gnl|canFam2|chr10 (71546981-71547043) | |
| 47-149, gnl|danRer3|chrUn (26527446-26527377) | |
| 47-149, gnl|dasNov1|scaffold_81555 (6197-6276) | |
| 47-149, gnl|echTel1|scaffold_218604 (3238-3323) | |
| 47-149, gnl|fr1|chrUn (261681136-261681207) | |
| 47-149, gnl|galGal2|chr10 (441104-441159) | |
| 47-149, gnl|hg17|chr19 (1966292-1966363) | |
| 47-149, gnl|Hg17|chr19 (1966396-1966294) | |
| 47-149, gnl|loxAfr1|scaffold_37027 (33459-33541) | |
| 47-149, gnl|mm7|chr7 (77702384-77702466) | |
| 47-149, gnl|Mm7|chr7 (77702496-77702379) | |
| 47-149, gnl|monDom2|scaffold_0 (7423811-7423759) | |
| 47-149, gnl|panTro1|chr20 (2066643-2066714) | |
| 47-149, gnl|rn3|chr7 (10572475-10572404) | |
| 47-149, gnl|tetNig1|chr15 (4631067-4631138) | |
| 47-149, gnl|xenTro1|scaffold_296 (713983-713912) | |
| 260-817, gnl|bosTau2|chr21 (49113761-49113204) | |
| 260-817, gnl|canFam2|chr8 (75653237-75654286) | |
| 260-817, gnl|canFam2|chr8 (75654106-75653260) | |
| 260-817, gnl|danRer3|chr20 (22893094-22894132) | |
| 260-817, gnl|danRer3|chr20 (22893952-22893101) | |
| 260-817, gnl|dasNov1|scaffold_2737 (58854-59894) | |
| 260-817, gnl|dasNov1|scaffold_2737 (59716-58864) | |
| 260-817, gnl|echTel1|scaffold_176101 (4283-3233) | |
| 260-817, gnl|echTel1|scaffold_176101 (3413-4265) | |
| 260-817, gnl|fr1|chrUn (15016665-15015618) | |
| 260-817, gnl|fr1|chrUn (305088653-305087803) | |
| 260-817, gnl|galGal2|chr5 (49522717-49523766) | |
| 260-817, gnl|galGal2|chr5 (49523586-49522735) | |
| 260-817, gnl|hg17|chr1 (23973446-23974304) | |
| 260-817, gnl|hg17|chr14 (104787008-104788057) | |
| 260-817, gnl|Hg17|chr14 (104787014-104787571) | |
| 260-817, gnl|loxAfr1|scaffold_11461 (28594-29643) | |
| 260-817, gnl|loxAfr1|scaffold_11461 (29463-28612) | |
| 260-817, gnl|mm7|chr12 (110502435-110503484) | |
| 260-817, gnl|Mm7|chr12 (110502441-110502998) | |
| 260-817, gnl|mm7|chr12_random (2990625-2989774) | |
| 260-817, gnl|monDom2|scaffold_6 (104317868-104316819) | |
| 260-817, gnl|monDom2|scaffold_6 (104316999-104317850) | |
| 260-817, gnl|oryCun1|scaffold_177502 (9047-8008) | |
| 260-817, gnl|oryCun1|scaffold_177502 (8190-9040) | |
| 260-817, gnl|panTro1|chr1 (24353164-24354020) | |
| 260-817, gnl|panTro1|chr15 (105463922-105464972) | |
| 260-817, gnl|rheMac2|chr1 (26525687-26526530) | |
| 260-817, gnl|rheMac2|chr7 (168601156-168602205) | |
| 260-817, gnl|rn3|chr6 (137991148-137992197) | |
| 260-817, gnl|rn3|chr6 (137992017-137991166) | |
| 260-817, gnl|tetNig1|chr10 (12548329-12547281) | |
| 260-817, gnl|tetNig1|chr10 (12547461-12548312) | |
| 260-817, gnl|xenTro1|scaffold_421 (265517-264479) | |
| 260-817, gnl|xenTro1|scaffold_421 (264659-265506) | |
| 302-748, gnl|bosTau2|chr13 (897951-897505) | |
| 302-748, gnl|canFam2|chr24 (13481740-13480691) | |
| 302-748, gnl|danRer3|chr20 (7521172-7520102) | |
| 302-748, gnl|dasNov1|scaffold_2737 (58848-59900) | |
| 302-748, gnl|echTel1|scaffold_315796 (42203-41152) | |
| 302-748, gnl|fr1|chrUn (15016673-15015613) | |
| 302-748, gnl|galGal2|chr14 (19148307-19149371) | |
| 302-748, gnl|hg17|chr20 (11851271-11852321) | |
| 302-748, gnl|Hg17|chr20 (11851316-11851762) | |
| 302-748, gnl|loxAfr1|scaffold_10389 (72136-71085) | |
| 302-748, gnl|mm7|chr2 (138024299-138025350) | |
| 302-748, gnl|Mm7|chr2 (138024345-138024791) | |
| 302-748, gnl|monDom2|scaffold_1 (44813401-44814452) | |
| 302-748, gnl|oryCun1|scaffold_177502 (9058-8002) | |
| 302-748, gnl|panTro1|chr21 (11708913-11709963) | |
| 302-748, gnl|rheMac2|chr10 (45220610-45221660) | |
| 302-748, gnl|rn3|chr3 (126313473-126314524) | |
| 302-748, gnl|tetNig1|chrUn_random (87782756-87781717) | |
| 302-748, gnl|xenTro1|scaffold_258 (939068-938018) |
| Aligned organism(s): 71 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 47-149, gnl|bosTau2|chr7 (28064983-28065085) | |
| 47-149, gnl|canFam2|chr10 (71546981-71547043) | |
| 47-149, gnl|danRer3|chrUn (26527446-26527377) | |
| 47-149, gnl|dasNov1|scaffold_81555 (6197-6276) | |
| 47-149, gnl|echTel1|scaffold_218604 (3238-3323) | |
| 47-149, gnl|fr1|chrUn (261681136-261681207) | |
| 47-149, gnl|galGal2|chr10 (441104-441159) | |
| 47-149, gnl|hg17|chr19 (1966292-1966363) | |
| 47-149, gnl|Hg17|chr19 (1966396-1966294) | |
| 47-149, gnl|loxAfr1|scaffold_37027 (33459-33541) | |
| 47-149, gnl|mm7|chr7 (77702384-77702466) | |
| 47-149, gnl|Mm7|chr7 (77702496-77702379) | |
| 47-149, gnl|monDom2|scaffold_0 (7423811-7423759) | |
| 47-149, gnl|panTro1|chr20 (2066643-2066714) | |
| 47-149, gnl|rn3|chr7 (10572475-10572404) | |
| 47-149, gnl|tetNig1|chr15 (4631067-4631138) | |
| 47-149, gnl|xenTro1|scaffold_296 (713983-713912) | |
| 260-817, gnl|bosTau2|chr21 (49113761-49113204) | |
| 260-817, gnl|canFam2|chr8 (75653237-75654286) | |
| 260-817, gnl|canFam2|chr8 (75654106-75653260) | |
| 260-817, gnl|danRer3|chr20 (22893094-22894132) | |
| 260-817, gnl|danRer3|chr20 (22893952-22893101) | |
| 260-817, gnl|dasNov1|scaffold_2737 (58854-59894) | |
| 260-817, gnl|dasNov1|scaffold_2737 (59716-58864) | |
| 260-817, gnl|echTel1|scaffold_176101 (4283-3233) | |
| 260-817, gnl|echTel1|scaffold_176101 (3413-4265) | |
| 260-817, gnl|fr1|chrUn (15016665-15015618) | |
| 260-817, gnl|fr1|chrUn (305088653-305087803) | |
| 260-817, gnl|galGal2|chr5 (49522717-49523766) | |
| 260-817, gnl|galGal2|chr5 (49523586-49522735) | |
| 260-817, gnl|hg17|chr1 (23973446-23974304) | |
| 260-817, gnl|hg17|chr14 (104787008-104788057) | |
| 260-817, gnl|Hg17|chr14 (104787014-104787571) | |
| 260-817, gnl|loxAfr1|scaffold_11461 (28594-29643) | |
| 260-817, gnl|loxAfr1|scaffold_11461 (29463-28612) | |
| 260-817, gnl|mm7|chr12 (110502435-110503484) | |
| 260-817, gnl|Mm7|chr12 (110502441-110502998) | |
| 260-817, gnl|mm7|chr12_random (2990625-2989774) | |
| 260-817, gnl|monDom2|scaffold_6 (104317868-104316819) | |
| 260-817, gnl|monDom2|scaffold_6 (104316999-104317850) | |
| 260-817, gnl|oryCun1|scaffold_177502 (9047-8008) | |
| 260-817, gnl|oryCun1|scaffold_177502 (8190-9040) | |
| 260-817, gnl|panTro1|chr1 (24353164-24354020) | |
| 260-817, gnl|panTro1|chr15 (105463922-105464972) | |
| 260-817, gnl|rheMac2|chr1 (26525687-26526530) | |
| 260-817, gnl|rheMac2|chr7 (168601156-168602205) | |
| 260-817, gnl|rn3|chr6 (137991148-137992197) | |
| 260-817, gnl|rn3|chr6 (137992017-137991166) | |
| 260-817, gnl|tetNig1|chr10 (12548329-12547281) | |
| 260-817, gnl|tetNig1|chr10 (12547461-12548312) | |
| 260-817, gnl|xenTro1|scaffold_421 (265517-264479) | |
| 260-817, gnl|xenTro1|scaffold_421 (264659-265506) | |
| 302-748, gnl|bosTau2|chr13 (897951-897505) | |
| 302-748, gnl|canFam2|chr24 (13481740-13480691) | |
| 302-748, gnl|danRer3|chr20 (7521172-7520102) | |
| 302-748, gnl|dasNov1|scaffold_2737 (58848-59900) | |
| 302-748, gnl|echTel1|scaffold_315796 (42203-41152) | |
| 302-748, gnl|fr1|chrUn (15016673-15015613) | |
| 302-748, gnl|galGal2|chr14 (19148307-19149371) | |
| 302-748, gnl|hg17|chr20 (11851271-11852321) | |
| 302-748, gnl|Hg17|chr20 (11851316-11851762) | |
| 302-748, gnl|loxAfr1|scaffold_10389 (72136-71085) | |
| 302-748, gnl|mm7|chr2 (138024299-138025350) | |
| 302-748, gnl|Mm7|chr2 (138024345-138024791) | |
| 302-748, gnl|monDom2|scaffold_1 (44813401-44814452) | |
| 302-748, gnl|oryCun1|scaffold_177502 (9058-8002) | |
| 302-748, gnl|panTro1|chr21 (11708913-11709963) | |
| 302-748, gnl|rheMac2|chr10 (45220610-45221660) | |
| 302-748, gnl|rn3|chr3 (126313473-126314524) | |
| 302-748, gnl|tetNig1|chrUn_random (87782756-87781717) | |
| 302-748, gnl|xenTro1|scaffold_258 (939068-938018) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| eep (0.122564) |