Non-Coding RNA Search

Ss1.1-reep20c_i19.5

Sequence:


               
               CGGCTCCAGCGCTCCGGGCAGACGCCGCCGCCACTGCCGCCACCGCCGCGAGAGAAGAAA
TGTATGAAGCAAGACCCCTCTCCAGGAGCCTCTTCTTGTACACCTTCCTGCAAAACCATG
GCCCCAGCTTCCTGGACGAGCAAGTGGTGGGGGTTCCTGGCGTGACCAATATCTTGGAGT
TCCACCCCGAGGTCTCCCCCCACGGCAGTGAGGCCCCCCATCACCTGGCCATGCAGCTGG
CCTCCATTGCCGATGATCTGGAGCTGAGGTTGCTGCTGCCCCAGTTCGCCGAGCCACTCT
GGATGATCGTGTACAGCTCTTTCTTCCCCTTTAGCCAGATAGGCCCGAGGGATGTTCTTC
GAAGCTTCATGATTGCGTTCACGAACCTCAGGGAGAACCGAAGGCTCAGGAGCATCTTGT
CCCTCAGGGACAGGGTGTCTCCCAGCCTGTGGCCCGAGCTGGCGCTGTCCCTGCTGCTGG
TGGTGATGCTTGCCTGGAGGGTCGTTACTGGTGAACGCACCTGCTCCCCTGGCCCAGCCC
GCGCTGTGCCGAGAAGGTGCCTCCTCCTTGTGGGTTGGTCACAGCGGACGTCAGGGGGGG
TGCTGGTCCCACCCCTGTGTCTGTGATGCCTGCGGCAAAAAAGAATCTGCTGGAATAGAT
TTCTGCAGGGTGAGGAGAGCTCAATAAAATGTTGGTTTCCAGCCAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGGCTCCAGCGCTCCGGGCAGACGCCGCCGCCACTGCCGCCACCGCCGCGAGAGAAGAAA
TGTATGAAGCAAGACCCCTCTCCAGGAGCCTCTTCTTGTACACCTTCCTGCAAAACCATG
GCCCCAGCTTCCTGGACGAGCAAGTGGTGGGGGTTCCTGGCGTGACCAATATCTTGGAGT
TCCACCCCGAGGTCTCCCCCCACGGCAGTGAGGCCCCCCATCACCTGGCCATGCAGCTGG
CCTCCATTGCCGATGATCTGGAGCTGAGGTTGCTGCTGCCCCAGTTCGCCGAGCCACTCT
GGATGATCGTGTACAGCTCTTTCTTCCCCTTTAGCCAGATAGGCCCGAGGGATGTTCTTC
GAAGCTTCATGATTGCGTTCACGAACCTCAGGGAGAACCGAAGGCTCAGGAGCATCTTGT
CCCTCAGGGACAGGGTGTCTCCCAGCCTGTGGCCCGAGCTGGCGCTGTCCCTGCTGCTGG
TGGTGATGCTTGCCTGGAGGGTCGTTACTGGTGAACGCACCTGCTCCCCTGGCCCAGCCC
GCGCTGTGCCGAGAAGGTGCCTCCTCCTTGTGGGTTGGTCACAGCGGACGTCAGGGGGGG
TGCTGGTCCCACCCCTGTGTCTGTGATGCCTGCGGCAAAAAAGAATCTGCTGGAATAGAT
TTCTGCAGGGTGAGGAGAGCTCAATAAAATGTTGGTTTCCAGCCAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               566-679, - strand, RNAz p=0.94856

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               566-679, - strand, RNAz p=0.94856

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               51-203, gnl|bosTau2|chr5 (71781246-71781395)
               

               
               51-203, gnl|canFam2|chr10 (25485010-25484846)
               

               
               51-203, gnl|hg17|chr22 (41844464-41844667)
               

               
               51-203, gnl|Hg17|chr22 (41844518-41844685)
               

               
               51-203, gnl|loxAfr1|scaffold_202676 (185-18)
               

               
               51-203, gnl|mm7|chr15 (83623559-83623743)
               

               
               51-203, gnl|panTro1|chr23 (42105667-42105870)
               

               
               51-203, gnl|rheMac2|chr10 (87104916-87105119)
               

               
               51-203, gnl|rn3|chr7 (121414398-121414206)
               


               
               499-705, gnl|bosTau2|chr5 (71784494-71784711)
               

               
               499-705, gnl|Hg17|chr22 (41850031-41850216)
               

               
               499-705, gnl|Mm7|chr15 (83626727-83626953)

Aligned organism(s): 12 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               51-203, gnl|bosTau2|chr5 (71781246-71781395)
               

               
               51-203, gnl|canFam2|chr10 (25485010-25484846)
               

               
               51-203, gnl|hg17|chr22 (41844464-41844667)
               

               
               51-203, gnl|Hg17|chr22 (41844518-41844685)
               

               
               51-203, gnl|loxAfr1|scaffold_202676 (185-18)
               

               
               51-203, gnl|mm7|chr15 (83623559-83623743)
               

               
               51-203, gnl|panTro1|chr23 (42105667-42105870)
               

               
               51-203, gnl|rheMac2|chr10 (87104916-87105119)
               

               
               51-203, gnl|rn3|chr7 (121414398-121414206)
               


               
               499-705, gnl|bosTau2|chr5 (71784494-71784711)
               

               
               499-705, gnl|Hg17|chr22 (41850031-41850216)
               

               
               499-705, gnl|Mm7|chr15 (83626727-83626953)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               hlv (0.139256)
               

               
               eep (0.122564)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hlv (0.139256)
               

               
               eep (0.122564)

	51-203, gnl\|bosTau2\|chr5 (71781246-71781395)
	51-203, gnl\|canFam2\|chr10 (25485010-25484846)
	51-203, gnl\|hg17\|chr22 (41844464-41844667)
	51-203, gnl\|Hg17\|chr22 (41844518-41844685)
	51-203, gnl\|loxAfr1\|scaffold_202676 (185-18)
	51-203, gnl\|mm7\|chr15 (83623559-83623743)
	51-203, gnl\|panTro1\|chr23 (42105667-42105870)
	51-203, gnl\|rheMac2\|chr10 (87104916-87105119)
	51-203, gnl\|rn3\|chr7 (121414398-121414206)

	499-705, gnl\|bosTau2\|chr5 (71784494-71784711)
	499-705, gnl\|Hg17\|chr22 (41850031-41850216)
	499-705, gnl\|Mm7\|chr15 (83626727-83626953)