Non-Coding RNA Search

Ss1.1-reep20c_n8.5

Sequence:


               
               GAAATAGATATGTATACAGACTCATAGAGGTTGGTGAGTATTTATTTCATTGGAATTTAT
GGCAAGTAAATCATAAAAAACCTTATTCACAGTCACAAAATAGTGATCCAATAATGGAAT
AATCCCTGCAACCCACCCTAAAGACAGCACAGCATTCATACAGATTCAGGATTAGGTATA
AATATTGTATGATACTTATACAAAAAAAGATAAATTTCATGTGTAGGATAAACCAAAAAC
ATGATTTCATGACTGAACTCAGAAATACATTGAATTTAGGAGTTCCCGTCGTGGCGCAGT
GGTTAACTTTTTTGAGGTTGCGGATTCGGTCCCTGCCCTTGCTCAGTGGGTTAACGATCC
AGCATTGCTGTGAGCTATGATGTAGGTTGCAGACGCGGCTTGGATCCTGCGTTGCTGTGA
CTCTGGCGTAGGCCGGTGGCTACAGCTCCGATTCAACCCCTAGCCTGGGAAACTCCATAT
GCCTCGAGAGCAGCCCAAAGAAAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAAATAGATATGTATACAGACTCATAGAGGTTGGTGAGTATTTATTTCATTGGAATTTAT
GGCAAGTAAATCATAAAAAACCTTATTCACAGTCACAAAATAGTGATCCAATAATGGAAT
AATCCCTGCAACCCACCCTAAAGACAGCACAGCATTCATACAGATTCAGGATTAGGTATA
AATATTGTATGATACTTATACAAAAAAAGATAAATTTCATGTGTAGGATAAACCAAAAAC
ATGATTTCATGACTGAACTCAGAAATACATTGAATTTAGGAGTTCCCGTCGTGGCGCAGT
GGTTAACTTTTTTGAGGTTGCGGATTCGGTCCCTGCCCTTGCTCAGTGGGTTAACGATCC
AGCATTGCTGTGAGCTATGATGTAGGTTGCAGACGCGGCTTGGATCCTGCGTTGCTGTGA
CTCTGGCGTAGGCCGGTGGCTACAGCTCCGATTCAACCCCTAGCCTGGGAAACTCCATAT
GCCTCGAGAGCAGCCCAAAGAAAT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               168-262, - strand, RNAz p=0.853669

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               168-262, - strand, RNAz p=0.853669

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-275, gnl|bosTau2|chr22 (21046389-21046670)
               

               
               1-275, gnl|Hg17|chr3 (73110666-73110992)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-275, gnl|bosTau2|chr22 (21046389-21046670)
               

               
               1-275, gnl|Hg17|chr3 (73110666-73110992)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               eep (0.122564)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eep (0.122564)

	1-275, gnl\|bosTau2\|chr22 (21046389-21046670)
	1-275, gnl\|Hg17\|chr3 (73110666-73110992)