Non-Coding RNA Search

Ss1.1-reep20c_o15.5

Sequence:


               
               GCGATACCGGTGGGACAGTGACCAAGGCTTTGCCGTCGGGAGGATTAACTGGCGATTGTC
GGCGTCTCCACTTATCTGGGTGGAATGCGAGGACGCCGGGGCGAGTGCTGAGGAGCGGCG
GTGACGGGGAGGGGTCAGTGGCTGGTGCCCCGGGAACCGAGGAAGCATCTGTTCCTTCTA
TTGGTTTCAAGGCTTTAGTGCCGGGCCCCGCCCGGCCGGGCCAGGCTGGCGGGCGGCGGC
AGTAGCTGCTGCAGCCGCTGGATCAGCCTCTGAGTGGGCCGAAAGGCGGACGCCGCCGCC
TCTGCCGTGGTGATGGCCCAGTGTGTACAGTCGGTGCAGGAGCTCATCCCGGACTCCTTC
GTACCCTGTGTCGCCGCGCTATGCAGCGACGAAGCCGAGCGGCTCACTCGTCTCAATCAC
CTTAGCTTCGCGGAGTTGCTTAAGCCCTTCTCTCGCCTCACTTCCGAGGTTCATATGAGA
GATCCCAATAATCAGCTTCATGTAATTAAAAATTTGAAGATAGCAGTAAGCAACATTATT
ACCCAACCACCTCAACCTGGAGCCATTCGGAAGCTTTTGAATGATGTTGTTTCTAGCAGT
CAGCCTGCAGAAGGATTAGTAGCTAATGTGATTACAGCAGGAGATTATGACCTCAACATC
AGTGCTACTACTCCATGGTTTGAATCTTACAGAGAGACCTTTCTTCAGTCGATGCCAGCA
TCAGATCATGAATTTCTGAACCACTATTTAGCATGCATGTTGGTGGCATCGTCTAGTGAA
GCTGAACCTGTGGAACAGTTTTCAAAGTTGTCACAAGAACAGCATCGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGATACCGGTGGGACAGTGACCAAGGCTTTGCCGTCGGGAGGATTAACTGGCGATTGTC
GGCGTCTCCACTTATCTGGGTGGAATGCGAGGACGCCGGGGCGAGTGCTGAGGAGCGGCG
GTGACGGGGAGGGGTCAGTGGCTGGTGCCCCGGGAACCGAGGAAGCATCTGTTCCTTCTA
TTGGTTTCAAGGCTTTAGTGCCGGGCCCCGCCCGGCCGGGCCAGGCTGGCGGGCGGCGGC
AGTAGCTGCTGCAGCCGCTGGATCAGCCTCTGAGTGGGCCGAAAGGCGGACGCCGCCGCC
TCTGCCGTGGTGATGGCCCAGTGTGTACAGTCGGTGCAGGAGCTCATCCCGGACTCCTTC
GTACCCTGTGTCGCCGCGCTATGCAGCGACGAAGCCGAGCGGCTCACTCGTCTCAATCAC
CTTAGCTTCGCGGAGTTGCTTAAGCCCTTCTCTCGCCTCACTTCCGAGGTTCATATGAGA
GATCCCAATAATCAGCTTCATGTAATTAAAAATTTGAAGATAGCAGTAAGCAACATTATT
ACCCAACCACCTCAACCTGGAGCCATTCGGAAGCTTTTGAATGATGTTGTTTCTAGCAGT
CAGCCTGCAGAAGGATTAGTAGCTAATGTGATTACAGCAGGAGATTATGACCTCAACATC
AGTGCTACTACTCCATGGTTTGAATCTTACAGAGAGACCTTTCTTCAGTCGATGCCAGCA
TCAGATCATGAATTTCTGAACCACTATTTAGCATGCATGTTGGTGGCATCGTCTAGTGAA
GCTGAACCTGTGGAACAGTTTTCAAAGTTGTCACAAGAACAGCATCGA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|47213128|emb|CAF96623.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|47213128|emb|CAF96623.1|

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               344-463, - strand, RNAz p=0.750706

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               344-463, - strand, RNAz p=0.750706

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-469, gnl|bosTau2|chr24 (19909737-19910213)
               

               
               1-469, gnl|Hg17|chr18 (27777049-27776569)
               

               
               1-469, gnl|Mm7|chr18 (21267062-21266629)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-469, gnl|bosTau2|chr24 (19909737-19910213)
               

               
               1-469, gnl|Hg17|chr18 (27777049-27776569)
               

               
               1-469, gnl|Mm7|chr18 (21267062-21266629)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

Help | Less info


               
               nje (0.16592)
               

               
               eep (0.122564)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nje (0.16592)
               

               
               eep (0.122564)

	1-469, gnl\|bosTau2\|chr24 (19909737-19910213)
	1-469, gnl\|Hg17\|chr18 (27777049-27776569)
	1-469, gnl\|Mm7\|chr18 (21267062-21266629)