Ss1.1-reep22c_e18.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GATTCCTAGCCCGGAGCGGAGCGCTAGGATCCGGGGTGCGGGAACACTAGCAGCCGCTCT CCGCACTAACTTTCCTCCCTCCTCAGAGGGGCTCCTGCTTCAGAGCCCGGCAACTGGCGG CCGTCGCCCGTGCAGCCCTAGGGCCCTTCGTCTCCCCTGCACGTGCCGCGCCCTGCGCGC CGCGTCCGGCCGCCAAGATGAGCGAGCTTAATACCAAAACATCCCCAGCAACCAATCAGG CATCTGTCCCAGAGGAAAAGGGGAAAGCTGGCAATGCCAAGAAGGCTGAGGAAGAGGAGG AGATTGATATTGATCTGACGGCACCAGAAACGGAGAAGGCTGCCCTTGCTATTCAGGGCA AGTTCCGTCGATTCCAGAAAAGGAAAAAGGATCCCAGCTCCTGAATATTCAGCCTTGCCC TTCACCCTACTCCCTTCTCTCTCCTTCTCCACAACTCTCCTATGTATCTTTGTCTCTTTG TCCCTCTAGCTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GATTCCTAGCCCGGAGCGGAGCGCTAGGATCCGGGGTGCGGGAACACTAGCAGCCGCTCT CCGCACTAACTTTCCTCCCTCCTCAGAGGGGCTCCTGCTTCAGAGCCCGGCAACTGGCGG CCGTCGCCCGTGCAGCCCTAGGGCCCTTCGTCTCCCCTGCACGTGCCGCGCCCTGCGCGC CGCGTCCGGCCGCCAAGATGAGCGAGCTTAATACCAAAACATCCCCAGCAACCAATCAGG CATCTGTCCCAGAGGAAAAGGGGAAAGCTGGCAATGCCAAGAAGGCTGAGGAAGAGGAGG AGATTGATATTGATCTGACGGCACCAGAAACGGAGAAGGCTGCCCTTGCTATTCAGGGCA AGTTCCGTCGATTCCAGAAAAGGAAAAAGGATCCCAGCTCCTGAATATTCAGCCTTGCCC TTCACCCTACTCCCTTCTCTCTCCTTCTCCACAACTCTCCTATGTATCTTTGTCTCTTTG TCCCTCTAGCTT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 297-480, - strand, RNAz p=0.929609 | |
| 328-441, - strand, RNAz p=0.987888 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 297-480, - strand, RNAz p=0.929609 | |
| 328-441, - strand, RNAz p=0.987888 |
| Aligned organism(s): 30 entry(ies) | More info |
| Aligned organism(s): 30 entry(ies) | Help | Less info |
| 1-206, gnl|bosTau2|chr3 (7554356-7554150) | |
| 1-206, gnl|canFam2|chr38 (24242484-24241715) | |
| 1-206, gnl|dasNov1|scaffold_12178 (26572-25827) | |
| 1-206, gnl|echTel1|scaffold_311345 (13855-13131) | |
| 1-206, gnl|hg17|chr1 (158041358-158042141) | |
| 1-206, gnl|Hg17|chr1 (158041638-158041846) | |
| 1-206, gnl|loxAfr1|scaffold_23286 (7849-8621) | |
| 1-206, gnl|mm7|chr1 (171166577-171165835) | |
| 1-206, gnl|Mm7|chr1 (171166302-171166104) | |
| 1-206, gnl|monDom2|scaffold_0 (28525377-28524518) | |
| 1-206, gnl|oryCun1|scaffold_182710 (9488-10228) | |
| 1-206, gnl|panTro1|chr1_random (27707839-27708622) | |
| 1-206, gnl|rheMac2|chr1 (139869273-139870045) | |
| 1-206, gnl|rn3|chr13 (87272414-87271657) | |
| 261-490, gnl|bosTau2|chr3 (7529101-7528860) | |
| 261-490, gnl|canFam2|chr38 (24222032-24221845) | |
| 261-490, gnl|danRer3|chr7 (57800411-57800600) | |
| 261-490, gnl|dasNov1|scaffold_12178 (4379-4192) | |
| 261-490, gnl|echTel1|scaffold_320165 (10455-10642) | |
| 261-490, gnl|fr1|chrUn (82411998-82411855) | |
| 261-490, gnl|hg17|chr1 (158067167-158067354) | |
| 261-490, gnl|Hg17|chr1 (158067201-158067436) | |
| 261-490, gnl|mm7|chr1 (171144656-171144470) | |
| 261-490, gnl|Mm7|chr1 (171144621-171144390) | |
| 261-490, gnl|monDom2|scaffold_0 (28511147-28510969) | |
| 261-490, gnl|oryCun1|scaffold_182710 (38282-38469) | |
| 261-490, gnl|panTro1|chr1 (140133877-140134035) | |
| 261-490, gnl|rheMac2|chr1 (139894203-139894390) | |
| 261-490, gnl|rn3|chr13 (87249667-87249484) | |
| 261-490, gnl|xenTro1|scaffold_837 (133090-133252) |
| Aligned organism(s): 30 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-206, gnl|bosTau2|chr3 (7554356-7554150) | |
| 1-206, gnl|canFam2|chr38 (24242484-24241715) | |
| 1-206, gnl|dasNov1|scaffold_12178 (26572-25827) | |
| 1-206, gnl|echTel1|scaffold_311345 (13855-13131) | |
| 1-206, gnl|hg17|chr1 (158041358-158042141) | |
| 1-206, gnl|Hg17|chr1 (158041638-158041846) | |
| 1-206, gnl|loxAfr1|scaffold_23286 (7849-8621) | |
| 1-206, gnl|mm7|chr1 (171166577-171165835) | |
| 1-206, gnl|Mm7|chr1 (171166302-171166104) | |
| 1-206, gnl|monDom2|scaffold_0 (28525377-28524518) | |
| 1-206, gnl|oryCun1|scaffold_182710 (9488-10228) | |
| 1-206, gnl|panTro1|chr1_random (27707839-27708622) | |
| 1-206, gnl|rheMac2|chr1 (139869273-139870045) | |
| 1-206, gnl|rn3|chr13 (87272414-87271657) | |
| 261-490, gnl|bosTau2|chr3 (7529101-7528860) | |
| 261-490, gnl|canFam2|chr38 (24222032-24221845) | |
| 261-490, gnl|danRer3|chr7 (57800411-57800600) | |
| 261-490, gnl|dasNov1|scaffold_12178 (4379-4192) | |
| 261-490, gnl|echTel1|scaffold_320165 (10455-10642) | |
| 261-490, gnl|fr1|chrUn (82411998-82411855) | |
| 261-490, gnl|hg17|chr1 (158067167-158067354) | |
| 261-490, gnl|Hg17|chr1 (158067201-158067436) | |
| 261-490, gnl|mm7|chr1 (171144656-171144470) | |
| 261-490, gnl|Mm7|chr1 (171144621-171144390) | |
| 261-490, gnl|monDom2|scaffold_0 (28511147-28510969) | |
| 261-490, gnl|oryCun1|scaffold_182710 (38282-38469) | |
| 261-490, gnl|panTro1|chr1 (140133877-140134035) | |
| 261-490, gnl|rheMac2|chr1 (139894203-139894390) | |
| 261-490, gnl|rn3|chr13 (87249667-87249484) | |
| 261-490, gnl|xenTro1|scaffold_837 (133090-133252) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nmm (0.132802) | |
| eep (0.122564) | |
| cly (0.120642) |