Non-Coding RNA Search

Ss1.1-reep22c_g8.5

Sequence:


               
               GGCTAAATCAACTGAAACTTGTGGGCAACTTCAAGTTGAAAGAAGCCTTAGCAGCAAAAG
ACTTTGTTAATCTCAGGTCTTTATCTGTACCATATGCTTATCAGTGCTGTGCATTTTGGG
GTTGTGACTCCTATGCACATTCAAACACAGACGATAACAGCCTCCAAGACTACAGTGTGG
CAAAGGAGAAAGGTTCCACTGATGGAACAGGTGTCACAAGCAGTGTTGACAATGAGGAAC
ACAGTCAAATCATTATCCACTGTACACCCTCAACAGGTGCTNTTAAGCCCTGTGAATATT
TACTGGGAAGTTGGATGATCCGTCTCACAGTGTGGTTCATTTTCTTGGTGGCCTTGTTTT
TCAACCTGCTTGTCATTTTAACAACATTTGCATCTTGTACATCACTGCCTTCCTCCAAAT
TGTTCATAGGCCTGATTTCTGTATCTAACTTATTCATGGGAGCCTATACTGGCATCTTAA
CTTTTCTGGATGCCGTGTCCTGGGGCCGATTTGCTGAATTTGGCATTTGGTGGGAGATTG
GCAGTGGCTGCAAAATAGCCGGGTTTCTTGCCGTTTTCTCCTCTGAAAGTGCCATATTTT
TATTAATGTTAGCAGCTGTGGAAAGAAGCTTATCTGCAAAAGATATAATGAAAAATGGGA
AAAGCGATCATCTCAAACAGTTCCAGATTGCTGCCTTTTTTGCTTTTCTGGGGGCTGCAG
TAGCAGGCTGTTTCCCCCTTTTCCATGGAGGGGAGTATTCTGCATCACCCCTGTGCTTGC
CATTTCCCACAGGGGAAACCCCATCGTTGGGATTTACGGTAACCTTAGTGCTCTTAAACT
CCCTAGCATTTTTATTAATGGCCATTATCTACACTAAACTCTACTGCAACCTGGAAAAAG
AAGACCTTTCAGAGAACTCACATTCTAGCATGATTAAGCATGTTGCTTGGCTCATCTTCA
CCAACTGCATCTTTTTCTGCCCCGTTGCATTTTTCTCATTTGCACCATTGATCACTGCAA
TCTCTATCAGCCCTGAAATAATGAAGTCTGTTACGCTGATATTTTTCCCATTGCCTGCTT
GCCTGAATCCAGTCCTGTACGTTTTCTTTAACCCAAAGTTTAAAGAAGACTGGAAGTTAC
TGAAGCGCCATATCACCAAGAAAAGCGGCTCTGTGTCAGTTTCCACCAGCAGCCAAGCTG
GTTGCGTGGACCAGGATTTCTACTATGACTGTGGCATGTACTCACATTTGCAGGGTAACC
TGAGCGTGTGTGACTGCTGCGAGTCCTTTCTGTTGACAAAGCCAGTGTCCTGCAAACACT
TAATAAAATCACACAGCTGTCCTGCCTTGGCAGTGGGTTCTTGCCAAAGGCCAGATGGCT
ATTGGTCTGACT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCTAAATCAACTGAAACTTGTGGGCAACTTCAAGTTGAAAGAAGCCTTAGCAGCAAAAG
ACTTTGTTAATCTCAGGTCTTTATCTGTACCATATGCTTATCAGTGCTGTGCATTTTGGG
GTTGTGACTCCTATGCACATTCAAACACAGACGATAACAGCCTCCAAGACTACAGTGTGG
CAAAGGAGAAAGGTTCCACTGATGGAACAGGTGTCACAAGCAGTGTTGACAATGAGGAAC
ACAGTCAAATCATTATCCACTGTACACCCTCAACAGGTGCTNTTAAGCCCTGTGAATATT
TACTGGGAAGTTGGATGATCCGTCTCACAGTGTGGTTCATTTTCTTGGTGGCCTTGTTTT
TCAACCTGCTTGTCATTTTAACAACATTTGCATCTTGTACATCACTGCCTTCCTCCAAAT
TGTTCATAGGCCTGATTTCTGTATCTAACTTATTCATGGGAGCCTATACTGGCATCTTAA
CTTTTCTGGATGCCGTGTCCTGGGGCCGATTTGCTGAATTTGGCATTTGGTGGGAGATTG
GCAGTGGCTGCAAAATAGCCGGGTTTCTTGCCGTTTTCTCCTCTGAAAGTGCCATATTTT
TATTAATGTTAGCAGCTGTGGAAAGAAGCTTATCTGCAAAAGATATAATGAAAAATGGGA
AAAGCGATCATCTCAAACAGTTCCAGATTGCTGCCTTTTTTGCTTTTCTGGGGGCTGCAG
TAGCAGGCTGTTTCCCCCTTTTCCATGGAGGGGAGTATTCTGCATCACCCCTGTGCTTGC
CATTTCCCACAGGGGAAACCCCATCGTTGGGATTTACGGTAACCTTAGTGCTCTTAAACT
CCCTAGCATTTTTATTAATGGCCATTATCTACACTAAACTCTACTGCAACCTGGAAAAAG
AAGACCTTTCAGAGAACTCACATTCTAGCATGATTAAGCATGTTGCTTGGCTCATCTTCA
CCAACTGCATCTTTTTCTGCCCCGTTGCATTTTTCTCATTTGCACCATTGATCACTGCAA
TCTCTATCAGCCCTGAAATAATGAAGTCTGTTACGCTGATATTTTTCCCATTGCCTGCTT
GCCTGAATCCAGTCCTGTACGTTTTCTTTAACCCAAAGTTTAAAGAAGACTGGAAGTTAC
TGAAGCGCCATATCACCAAGAAAAGCGGCTCTGTGTCAGTTTCCACCAGCAGCCAAGCTG
GTTGCGTGGACCAGGATTTCTACTATGACTGTGGCATGTACTCACATTTGCAGGGTAACC
TGAGCGTGTGTGACTGCTGCGAGTCCTTTCTGTTGACAAAGCCAGTGTCCTGCAAACACT
TAATAAAATCACACAGCTGTCCTGCCTTGGCAGTGGGTTCTTGCCAAAGGCCAGATGGCT
ATTGGTCTGACT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55635655|ref|XP_508338.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55635655|ref|XP_508338.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               674-873, - strand, RNAz p=0.829973
               

               
               1275-1392, - strand, RNAz p=0.535471

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               674-873, - strand, RNAz p=0.829973
               

               
               1275-1392, - strand, RNAz p=0.535471

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               74-193, gnl|bosTau2|chr15 (36598174-36598293)
               

               
               74-193, gnl|Hg17|chr11 (27350524-27350405)
               

               
               74-193, gnl|Mm7|chr2 (109858869-109858988)
               


               
               275-1392, gnl|bosTau2|chr15 (36601001-36602118)
               

               
               275-1392, gnl|Hg17|chr11 (27347268-27346151)
               

               
               275-1392, gnl|Mm7|chr2 (109862036-109863153)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               74-193, gnl|bosTau2|chr15 (36598174-36598293)
               

               
               74-193, gnl|Hg17|chr11 (27350524-27350405)
               

               
               74-193, gnl|Mm7|chr2 (109858869-109858988)
               


               
               275-1392, gnl|bosTau2|chr15 (36601001-36602118)
               

               
               275-1392, gnl|Hg17|chr11 (27347268-27346151)
               

               
               275-1392, gnl|Mm7|chr2 (109862036-109863153)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               cst (0.140036)
               

               
               nmm (0.132802)
               

               
               eep (0.122564)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cst (0.140036)
               

               
               nmm (0.132802)
               

               
               eep (0.122564)

	674-873, - strand, RNAz p=0.829973
	1275-1392, - strand, RNAz p=0.535471

	74-193, gnl\|bosTau2\|chr15 (36598174-36598293)
	74-193, gnl\|Hg17\|chr11 (27350524-27350405)
	74-193, gnl\|Mm7\|chr2 (109858869-109858988)

	275-1392, gnl\|bosTau2\|chr15 (36601001-36602118)
	275-1392, gnl\|Hg17\|chr11 (27347268-27346151)
	275-1392, gnl\|Mm7\|chr2 (109862036-109863153)