Non-Coding RNA Search

Ss1.1-reep22c_p1.5

Sequence:


               
               TTTTTTTTTTTTTTTTTTTTTGCAAAAAGTTAGAGGCGGGCCCTCAACCGTCCCCTGGGG
TCCTGCAGAAGCCCAGGCCTGAGCTGCCCACCTCCCAGGGCCTCACACTTCTCTCTCTGA
TCTTCGGGCCCTGAGGCCTCCTGTTTGAATGGATTCCTGCGTTTTTTATACTGAATGTGT
CTAGGTTGTCCTTTATTTTTTATTTTCCCTATCGAGTGCCGTAGATGAAGGGTGATGACA
ATCCTGTAAATGTACTAGAACTTTTTTATTAAAGGAACTTTTCCCAGAGAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTTTTTTTTTTTTTTTGCAAAAAGTTAGAGGCGGGCCCTCAACCGTCCCCTGGGG
TCCTGCAGAAGCCCAGGCCTGAGCTGCCCACCTCCCAGGGCCTCACACTTCTCTCTCTGA
TCTTCGGGCCCTGAGGCCTCCTGTTTGAATGGATTCCTGCGTTTTTTATACTGAATGTGT
CTAGGTTGTCCTTTATTTTTTATTTTCCCTATCGAGTGCCGTAGATGAAGGGTGATGACA
ATCCTGTAAATGTACTAGAACTTTTTTATTAAAGGAACTTTTCCCAGAGAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Aligned organism(s): 14 entry(ies)

More info

Aligned organism(s): 14 entry(ies)

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               1-289, gnl|bosTau2|chr18 (14343378-14343108)
               

               
               1-289, gnl|canFam2|chr5 (83873080-83872853)
               

               
               1-289, gnl|dasNov1|scaffold_44167 (14125-13925)
               

               
               1-289, gnl|echTel1|scaffold_320430 (277950-278157)
               

               
               1-289, gnl|hg17|chr16 (67290161-67290348)
               

               
               1-289, gnl|Hg17|chr16 (67290181-67290444)
               

               
               1-289, gnl|loxAfr1|scaffold_40326 (20245-20023)
               

               
               1-289, gnl|mm7|chr8 (105154447-105154670)
               

               
               1-289, gnl|Mm7|chr8 (105154465-105154773)
               

               
               1-289, gnl|monDom2|scaffold_23 (5525508-5525289)
               

               
               1-289, gnl|oryCun1|scaffold_111635 (81-251)
               

               
               1-289, gnl|panTro1|chr18 (61602459-61602647)
               

               
               1-289, gnl|rheMac2|chr20 (67053239-67053425)
               

               
               1-289, gnl|rn3|chr19 (36398360-36398581)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-289, gnl|bosTau2|chr18 (14343378-14343108)
               

               
               1-289, gnl|canFam2|chr5 (83873080-83872853)
               

               
               1-289, gnl|dasNov1|scaffold_44167 (14125-13925)
               

               
               1-289, gnl|echTel1|scaffold_320430 (277950-278157)
               

               
               1-289, gnl|hg17|chr16 (67290161-67290348)
               

               
               1-289, gnl|Hg17|chr16 (67290181-67290444)
               

               
               1-289, gnl|loxAfr1|scaffold_40326 (20245-20023)
               

               
               1-289, gnl|mm7|chr8 (105154447-105154670)
               

               
               1-289, gnl|Mm7|chr8 (105154465-105154773)
               

               
               1-289, gnl|monDom2|scaffold_23 (5525508-5525289)
               

               
               1-289, gnl|oryCun1|scaffold_111635 (81-251)
               

               
               1-289, gnl|panTro1|chr18 (61602459-61602647)
               

               
               1-289, gnl|rheMac2|chr20 (67053239-67053425)
               

               
               1-289, gnl|rn3|chr19 (36398360-36398581)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

Help | Less info


               
               amn (0.835422)
               

               
               eep (0.122564)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               amn (0.835422)
               

               
               eep (0.122564)

	1-289, gnl\|bosTau2\|chr18 (14343378-14343108)
	1-289, gnl\|canFam2\|chr5 (83873080-83872853)
	1-289, gnl\|dasNov1\|scaffold_44167 (14125-13925)
	1-289, gnl\|echTel1\|scaffold_320430 (277950-278157)
	1-289, gnl\|hg17\|chr16 (67290161-67290348)
	1-289, gnl\|Hg17\|chr16 (67290181-67290444)
	1-289, gnl\|loxAfr1\|scaffold_40326 (20245-20023)
	1-289, gnl\|mm7\|chr8 (105154447-105154670)
	1-289, gnl\|Mm7\|chr8 (105154465-105154773)
	1-289, gnl\|monDom2\|scaffold_23 (5525508-5525289)
	1-289, gnl\|oryCun1\|scaffold_111635 (81-251)
	1-289, gnl\|panTro1\|chr18 (61602459-61602647)
	1-289, gnl\|rheMac2\|chr20 (67053239-67053425)
	1-289, gnl\|rn3\|chr19 (36398360-36398581)