Non-Coding RNA Search

Ss1.1-reep23c_b9.5

Sequence:


               
               TTGGGTAAGAGAAAACGGGGATGTGTAAGACAACACAGGCAGCCTCGTCTGCCCCCTCTC
CCAGCCAGAGAAGAGTGGCTTAATCTCCTTTGTTTATAAGTTACCCAGGAACAGGAGCAG
TGGGGGAAGGAGGGCCAGGAAGTGTCCCAGCCACCAGACTGGAGGAGGGGTCTGTGGCCT
GGGCTGAAGGGGGACCGGAGGGGCAGGTGTTTTACACTCACAGGAGGAGGAGCTGGCGGG
CAAGGAATAGGGATCCTGACTCCTGAGCCAGAAGGTGGAGTGGGGGTGGGGGGTGTGAGG
TGCCCCAGGGACACGGGCCCCAGCAGGCGTGGAGCTGGAGGAAGCTCCTAATTCATATTG
AATTCAGTTCCCTCCACTCTGGGGGGCTGCCGGGCCGGGGCCTCAGGGACCTCTGACCCT
GCACCTGGACAGGGGTGGGGAGGGCCTCAGCGCAAGGATGCCGTTGCATTTGGGTTTTTC
ACATTGCCTATTTATGAATATATGAATCTTTATATCAAATCTATTTTTTAAAACATGGAA
ACGTTGCCTTTATGGAGACTTCGCAGAGCCAGAGCGTACACATTCCTAAACCATTAAACG
TTTCTGTAATGAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTGGGTAAGAGAAAACGGGGATGTGTAAGACAACACAGGCAGCCTCGTCTGCCCCCTCTC
CCAGCCAGAGAAGAGTGGCTTAATCTCCTTTGTTTATAAGTTACCCAGGAACAGGAGCAG
TGGGGGAAGGAGGGCCAGGAAGTGTCCCAGCCACCAGACTGGAGGAGGGGTCTGTGGCCT
GGGCTGAAGGGGGACCGGAGGGGCAGGTGTTTTACACTCACAGGAGGAGGAGCTGGCGGG
CAAGGAATAGGGATCCTGACTCCTGAGCCAGAAGGTGGAGTGGGGGTGGGGGGTGTGAGG
TGCCCCAGGGACACGGGCCCCAGCAGGCGTGGAGCTGGAGGAAGCTCCTAATTCATATTG
AATTCAGTTCCCTCCACTCTGGGGGGCTGCCGGGCCGGGGCCTCAGGGACCTCTGACCCT
GCACCTGGACAGGGGTGGGGAGGGCCTCAGCGCAAGGATGCCGTTGCATTTGGGTTTTTC
ACATTGCCTATTTATGAATATATGAATCTTTATATCAAATCTATTTTTTAAAACATGGAA
ACGTTGCCTTTATGGAGACTTCGCAGAGCCAGAGCGTACACATTCCTAAACCATTAAACG
TTTCTGTAATGAAAAAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               232-420, + strand, RNAz p=0.999916

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               232-420, + strand, RNAz p=0.999916

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               119-609, gnl|bosTau2|chr22 (47651995-47651502)
               

               
               119-609, gnl|Hg17|chr3 (130289580-130289117)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               119-609, gnl|bosTau2|chr22 (47651995-47651502)
               

               
               119-609, gnl|Hg17|chr3 (130289580-130289117)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               nlu (0.191681)
               

               
               rec (0.17307)
               

               
               pty (0.142714)
               

               
               eep (0.122564)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nlu (0.191681)
               

               
               rec (0.17307)
               

               
               pty (0.142714)
               

               
               eep (0.122564)

	119-609, gnl\|bosTau2\|chr22 (47651995-47651502)
	119-609, gnl\|Hg17\|chr3 (130289580-130289117)