Ss1.1-reep23c_e12.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGCAGCCCAAGCTCCAGCCGCCCTCTCCTGCTAACTCAGGATCCTTGCAAGGTCCACAGA CCCCCCAGTCAACTGGCAGTAATTCGATGGCAGAGGTTCCAGGTGACCTGAAGCCACCTA CTCCAGCCTCTACCCCTCATGGACAAATGACCCCAATGCAAGGCGGAAGAAGCAGTACAG TCAGTGTGCACGACCCATTCTCGGACGCAAGTGATGCATCGTTCCCCAAACGCAACTCCA TGACTCCGAGCGCCCCCTACCAGCAGGGCATGAGCATGCCGGACGTGATGGGCAGAATGC CCTACGAGCCCAACAAGGACCCCTTTGGAGGAATGAGAAAAGTGCCTGGAAGTAGCGAGC CGTTTATGACGCAAGGACAGATGCCCACCAGCAGCATGCAGGACATGTATAACCAGAGTC CGTCTGGAGCCATGTCCAGTCTAGGCATGGGGCAGCGGCAGCAGTTTCCCTATGGGGCCA GTTACGATCGAAGGCATGAACCTTACGGGCAGCAGTACCCAGGCCAAGGCCCTCCCTCAG GACAGCCGCCATATGGAGGACACCAGCCAGGCCTGTACCCACAGCAGACGAATTACAAGC GCCATATGGACGGCATGTATGGGCCTCCCGCCAAGCGCCACGAGGGAGACGTGTACAACA TGCAGTACGGCAACCAGCAGCAGGAGATGTACAACCAGTACAGCGGTTCCTACTCGGGCC CGGACCGGCGGC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGCAGCCCAAGCTCCAGCCGCCCTCTCCTGCTAACTCAGGATCCTTGCAAGGTCCACAGA CCCCCCAGTCAACTGGCAGTAATTCGATGGCAGAGGTTCCAGGTGACCTGAAGCCACCTA CTCCAGCCTCTACCCCTCATGGACAAATGACCCCAATGCAAGGCGGAAGAAGCAGTACAG TCAGTGTGCACGACCCATTCTCGGACGCAAGTGATGCATCGTTCCCCAAACGCAACTCCA TGACTCCGAGCGCCCCCTACCAGCAGGGCATGAGCATGCCGGACGTGATGGGCAGAATGC CCTACGAGCCCAACAAGGACCCCTTTGGAGGAATGAGAAAAGTGCCTGGAAGTAGCGAGC CGTTTATGACGCAAGGACAGATGCCCACCAGCAGCATGCAGGACATGTATAACCAGAGTC CGTCTGGAGCCATGTCCAGTCTAGGCATGGGGCAGCGGCAGCAGTTTCCCTATGGGGCCA GTTACGATCGAAGGCATGAACCTTACGGGCAGCAGTACCCAGGCCAAGGCCCTCCCTCAG GACAGCCGCCATATGGAGGACACCAGCCAGGCCTGTACCCACAGCAGACGAATTACAAGC GCCATATGGACGGCATGTATGGGCCTCCCGCCAAGCGCCACGAGGGAGACGTGTACAACA TGCAGTACGGCAACCAGCAGCAGGAGATGTACAACCAGTACAGCGGTTCCTACTCGGGCC CGGACCGGCGGC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 615-732, - strand, RNAz p=0.634103 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 615-732, - strand, RNAz p=0.634103 |
| Aligned organism(s): 38 entry(ies) | More info |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
| 168-342, gnl|bosTau2|chr9 (56967825-56967651) | |
| 168-342, gnl|canFam2|chr1 (49825276-49825407) | |
| 168-342, gnl|canFam2|chr1 (49825276-49825407) | |
| 168-342, gnl|danRer3|chrUn (134104938-134104807) | |
| 168-342, gnl|danRer3|chrUn (134104938-134104807) | |
| 168-342, gnl|dasNov1|scaffold_61298 (6443-6574) | |
| 168-342, gnl|dasNov1|scaffold_61298 (6443-6574) | |
| 168-342, gnl|echTel1|scaffold_313139 (45359-45467) | |
| 168-342, gnl|echTel1|scaffold_313139 (45359-45467) | |
| 168-342, gnl|fr1|chrUn (20880892-20881021) | |
| 168-342, gnl|fr1|chrUn (20880892-20881021) | |
| 168-342, gnl|galGal2|chr3 (50413412-50413542) | |
| 168-342, gnl|galGal2|chr3 (50413412-50413542) | |
| 168-342, gnl|hg17|chr6 (157603266-157603397) | |
| 168-342, gnl|Hg17|chr6 (157603283-157603457) | |
| 168-342, gnl|hg17|chr6_random (1405303-1405434) | |
| 168-342, gnl|loxAfr1|scaffold_1884 (29351-29221) | |
| 168-342, gnl|loxAfr1|scaffold_1884 (29351-29221) | |
| 168-342, gnl|mm7|chr17 (5272909-5273039) | |
| 168-342, gnl|mm7|chr17 (5272909-5273039) | |
| 168-342, gnl|Mm7|chr17 (5272925-5273099) | |
| 168-342, gnl|monDom2|scaffold_0 (46831542-46831411) | |
| 168-342, gnl|monDom2|scaffold_0 (46831542-46831411) | |
| 168-342, gnl|oryCun1|scaffold_185708 (11867-11741) | |
| 168-342, gnl|oryCun1|scaffold_185708 (11867-11741) | |
| 168-342, gnl|panTro1|chr5 (161223374-161223505) | |
| 168-342, gnl|panTro1|chr5 (161223374-161223505) | |
| 168-342, gnl|rheMac2|chr4 (105753444-105753313) | |
| 168-342, gnl|rheMac2|chr4 (105753444-105753313) | |
| 168-342, gnl|rn3|chr1 (40310495-40310625) | |
| 168-342, gnl|rn3|chr1 (40310495-40310625) | |
| 168-342, gnl|tetNig1|chr21 (5811013-5811141) | |
| 168-342, gnl|tetNig1|chr21 (5811013-5811141) | |
| 168-342, gnl|xenTro1|scaffold_124 (1722769-1722638) | |
| 168-342, gnl|xenTro1|scaffold_124 (1722769-1722638) | |
| 590-732, gnl|bosTau2|chr9 (56955904-56955762) | |
| 590-732, gnl|Hg17|chr6 (157613951-157614093) | |
| 590-732, gnl|Mm7|chr17 (5281802-5281944) |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 168-342, gnl|bosTau2|chr9 (56967825-56967651) | |
| 168-342, gnl|canFam2|chr1 (49825276-49825407) | |
| 168-342, gnl|canFam2|chr1 (49825276-49825407) | |
| 168-342, gnl|danRer3|chrUn (134104938-134104807) | |
| 168-342, gnl|danRer3|chrUn (134104938-134104807) | |
| 168-342, gnl|dasNov1|scaffold_61298 (6443-6574) | |
| 168-342, gnl|dasNov1|scaffold_61298 (6443-6574) | |
| 168-342, gnl|echTel1|scaffold_313139 (45359-45467) | |
| 168-342, gnl|echTel1|scaffold_313139 (45359-45467) | |
| 168-342, gnl|fr1|chrUn (20880892-20881021) | |
| 168-342, gnl|fr1|chrUn (20880892-20881021) | |
| 168-342, gnl|galGal2|chr3 (50413412-50413542) | |
| 168-342, gnl|galGal2|chr3 (50413412-50413542) | |
| 168-342, gnl|hg17|chr6 (157603266-157603397) | |
| 168-342, gnl|Hg17|chr6 (157603283-157603457) | |
| 168-342, gnl|hg17|chr6_random (1405303-1405434) | |
| 168-342, gnl|loxAfr1|scaffold_1884 (29351-29221) | |
| 168-342, gnl|loxAfr1|scaffold_1884 (29351-29221) | |
| 168-342, gnl|mm7|chr17 (5272909-5273039) | |
| 168-342, gnl|mm7|chr17 (5272909-5273039) | |
| 168-342, gnl|Mm7|chr17 (5272925-5273099) | |
| 168-342, gnl|monDom2|scaffold_0 (46831542-46831411) | |
| 168-342, gnl|monDom2|scaffold_0 (46831542-46831411) | |
| 168-342, gnl|oryCun1|scaffold_185708 (11867-11741) | |
| 168-342, gnl|oryCun1|scaffold_185708 (11867-11741) | |
| 168-342, gnl|panTro1|chr5 (161223374-161223505) | |
| 168-342, gnl|panTro1|chr5 (161223374-161223505) | |
| 168-342, gnl|rheMac2|chr4 (105753444-105753313) | |
| 168-342, gnl|rheMac2|chr4 (105753444-105753313) | |
| 168-342, gnl|rn3|chr1 (40310495-40310625) | |
| 168-342, gnl|rn3|chr1 (40310495-40310625) | |
| 168-342, gnl|tetNig1|chr21 (5811013-5811141) | |
| 168-342, gnl|tetNig1|chr21 (5811013-5811141) | |
| 168-342, gnl|xenTro1|scaffold_124 (1722769-1722638) | |
| 168-342, gnl|xenTro1|scaffold_124 (1722769-1722638) | |
| 590-732, gnl|bosTau2|chr9 (56955904-56955762) | |
| 590-732, gnl|Hg17|chr6 (157613951-157614093) | |
| 590-732, gnl|Mm7|chr17 (5281802-5281944) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| eep (0.122564) |