Non-Coding RNA Search

Ss1.1-reep23c_e21.5

Sequence:


               
               AAACGAGACCGAGGACCAGTACTCGCTGATGGAGGATGAGGATGACCTTCCCCACCATGA
GGAACGCACATGGTATGTAGGCAAGATCAACCGCACACAAGCTGAAGAAATGCTGAGTGG
CAAGCGGGATGGCACCTTCCTCATCCGTGAGAGCAGCCAGCGGGGCTGCTATGCCTGCTC
TGTGGTGGTGGACGGCGACACCAAGCACTGCGTCATCTACCGCACGGCCACAGGCTTCGG
CTTCGCGGAGCCCTACAACTTGTACGGGTCCCTGAAGGAGCTGGTGCTGCACTATCAGCA
CGCCTCGCTGGTGCAGCACAACGATGCGCTCACCGTCACCCTCGCCCACCCAGTGCGCGC
CCCGGGCCCTGGGCCCCCACCTGCTGCCCGCTGAGCGCTGAGCAGGAGAACCGGCTCCGG
ATCAGAGCCACCCCCAGCGCCAGAGGCTAGGGTGGCAGCTGCATCCGGGATCTCTATCTT
TCTGAATCTGTCTCTTCTTTCTTAGGTTTTCTCTGTCTGTCTCTTTGTGAATCTCTCCCA
GTGAATCTCCATTTGCAGGTTCTATCAGTCTTTCCTCCAAGTCTGCCTGTCTCTCTGTCT
CCCTCTGTCACTATTCTGTCTCTTTCTAGTTCCATCTGTCCTCTTTTTCTCTCTTGGTCT
CTGTTCCTCTGTGTATCTGTGTTGGGGGTCCCGCCTCCCCCCACGCCCTATCCCCCTTCC
CCACTGGCACCGCTCTCCCTACGGCTCTGGCCACCCACGATGACCCTGTGTCCTGCCCCG
CCCCTGCAGGCCCCCGGGGTCCCCACAAGCCCCACCTGGCTGCACCTGCCATGTTTACAG
AGGCCCCCTGGGCTGCGCAGCCCCAGCCTGGGTGCCCCGATTTTTTAAGCCATAGACCTG
GGGTCGGGGCAGGAAGGAACTTCGCTCGGCCACTTCCAAGAACCTCAGCCGTGACATTTG
GGGCCAGGCGGGACCTGCCCCACAGACCCCAACTTCCCCTTCCAACCCTGAAGTGAAACC
CAGCACTGGGTTATCCCCACGATGGGGCTGCTGCCAAGAAGTAACCCCCCTGAAAAGAAA
ATAATTAAAAATAAACTCCTGAGCCGACCCCAGGCCTCCAAGGATTCGAGGCAGCCAGCA
CCTCTGGGGCGGCTGACACGCAAGGCTGCCCGCAGCACCTCCACTCGATGCAGACTCGAG
GCTTCTCGATCATGTTGGGTTCTGATTTTATTTTTCCTCAACTATATGTAAAACCCTCTC
TTCTCTCCTCTTTTGGGATGAGAGCCCTGGTTTTCTACACCACCCATGGACCCCCACCCC
CCCTTCTGCCTGCCTGGCCAGGCTGGCAGGTGGGTTTTGTATGGTACGTTGATACTGATA
TGGATATAAAACATTGAACTCGGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAACGAGACCGAGGACCAGTACTCGCTGATGGAGGATGAGGATGACCTTCCCCACCATGA
GGAACGCACATGGTATGTAGGCAAGATCAACCGCACACAAGCTGAAGAAATGCTGAGTGG
CAAGCGGGATGGCACCTTCCTCATCCGTGAGAGCAGCCAGCGGGGCTGCTATGCCTGCTC
TGTGGTGGTGGACGGCGACACCAAGCACTGCGTCATCTACCGCACGGCCACAGGCTTCGG
CTTCGCGGAGCCCTACAACTTGTACGGGTCCCTGAAGGAGCTGGTGCTGCACTATCAGCA
CGCCTCGCTGGTGCAGCACAACGATGCGCTCACCGTCACCCTCGCCCACCCAGTGCGCGC
CCCGGGCCCTGGGCCCCCACCTGCTGCCCGCTGAGCGCTGAGCAGGAGAACCGGCTCCGG
ATCAGAGCCACCCCCAGCGCCAGAGGCTAGGGTGGCAGCTGCATCCGGGATCTCTATCTT
TCTGAATCTGTCTCTTCTTTCTTAGGTTTTCTCTGTCTGTCTCTTTGTGAATCTCTCCCA
GTGAATCTCCATTTGCAGGTTCTATCAGTCTTTCCTCCAAGTCTGCCTGTCTCTCTGTCT
CCCTCTGTCACTATTCTGTCTCTTTCTAGTTCCATCTGTCCTCTTTTTCTCTCTTGGTCT
CTGTTCCTCTGTGTATCTGTGTTGGGGGTCCCGCCTCCCCCCACGCCCTATCCCCCTTCC
CCACTGGCACCGCTCTCCCTACGGCTCTGGCCACCCACGATGACCCTGTGTCCTGCCCCG
CCCCTGCAGGCCCCCGGGGTCCCCACAAGCCCCACCTGGCTGCACCTGCCATGTTTACAG
AGGCCCCCTGGGCTGCGCAGCCCCAGCCTGGGTGCCCCGATTTTTTAAGCCATAGACCTG
GGGTCGGGGCAGGAAGGAACTTCGCTCGGCCACTTCCAAGAACCTCAGCCGTGACATTTG
GGGCCAGGCGGGACCTGCCCCACAGACCCCAACTTCCCCTTCCAACCCTGAAGTGAAACC
CAGCACTGGGTTATCCCCACGATGGGGCTGCTGCCAAGAAGTAACCCCCCTGAAAAGAAA
ATAATTAAAAATAAACTCCTGAGCCGACCCCAGGCCTCCAAGGATTCGAGGCAGCCAGCA
CCTCTGGGGCGGCTGACACGCAAGGCTGCCCGCAGCACCTCCACTCGATGCAGACTCGAG
GCTTCTCGATCATGTTGGGTTCTGATTTTATTTTTCCTCAACTATATGTAAAACCCTCTC
TTCTCTCCTCTTTTGGGATGAGAGCCCTGGTTTTCTACACCACCCATGGACCCCCACCCC
CCCTTCTGCCTGCCTGGCCAGGCTGGCAGGTGGGTTTTGTATGGTACGTTGATACTGATA
TGGATATAAAACATTGAACTCGGT

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               16-187, gnl|bosTau2|chr7 (4275108-4274937)
               

               
               16-187, gnl|Hg17|chr19 (18140536-18140707)
               

               
               16-187, gnl|Mm7|chr8 (69223318-69223147)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               16-187, gnl|bosTau2|chr7 (4275108-4274937)
               

               
               16-187, gnl|Hg17|chr19 (18140536-18140707)
               

               
               16-187, gnl|Mm7|chr8 (69223318-69223147)

Expressed library(ies): 10 entry(ies)

More info

Expressed library(ies): 10 entry(ies)

Help | Less info


               
               fce (0.543183)
               

               
               cov (0.396458)
               

               
               ebs (0.354904)
               

               
               ece (0.229305)
               

               
               col (0.195008)
               

               
               ton (0.1755)
               

               
               hyp (0.142837)
               

               
               eep (0.122564)
               

               
               ecc (0.115035)
               

               
               nbm (0.0993246)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (0.543183)
               

               
               cov (0.396458)
               

               
               ebs (0.354904)
               

               
               ece (0.229305)
               

               
               col (0.195008)
               

               
               ton (0.1755)
               

               
               hyp (0.142837)
               

               
               eep (0.122564)
               

               
               ecc (0.115035)
               

               
               nbm (0.0993246)

	16-187, gnl\|bosTau2\|chr7 (4275108-4274937)
	16-187, gnl\|Hg17\|chr19 (18140536-18140707)
	16-187, gnl\|Mm7\|chr8 (69223318-69223147)

	fce (0.543183)
	cov (0.396458)
	ebs (0.354904)
	ece (0.229305)
	col (0.195008)
	ton (0.1755)
	hyp (0.142837)
	eep (0.122564)
	ecc (0.115035)
	nbm (0.0993246)