Non-Coding RNA Search

Ss1.1-reep23c_f9.5

Sequence:


               
               ATAATTTGGCCATCAGTTGCATCTCAGTCAGCAGATCCCATCAGGGCTCCCTCCCAGTCA
GCAGATCCCATAGGGGCTCCCTCAGCCCCGTTGCTACAGTTGCTTAACTATTCCTCAACC
AAGCCCTTGGGATTGGGCATTCCCCTCCACCCACCGCCCACCCCCACCCACTTGCTCTAT
AGGTTTTGAGCTTCCTCCAGTTCACAGCCATGATGCCCAGGGGTCTTTTCCTTTGGGATT
GATGCCATCGTTTCTGAGTTAGCATTATGCTGTGACAATATTAGGAGTTCTCCCAAGCCC
TGCAGTCCTCAGGCATTGCTTCCTGAGCAGATTGAGGCAAGCAGGCCAGGAATCCACCAT
GACATAAAGGGTCCGTCCTTTATGACCAGTGTGTGACTGTGCAGTCTAAGCAGGTACAGG
TCAATCACTTGCTATGCACCCCTTGACGTTTCCCAGTGATCTCACTCCAGGCTGCTCCAC
AGGGATGGCCCTGGTGTGCCAGCAGCAGCATGCTTTCAGGACTGTCTTAATTAACATCCT
CCTGCCACTTGGGGTCTGTCTAGGAGGAAACAAGGTCTAGGAAGGTACAAAGCCAGGTGG
CTAGGTTGGCCTTCAGTTAGAGCCCCATTTTACTTCAGAATGCAGGGCAATGGAAGAAAG
CAGGATCCTGAGGTTTCCAGTAGAAGTGCTGGCCTGTTCATTCTCAGTGAACTCCAAGTT
CATGGTAACAGCCCCTGCCATTAGCCAGAAGAGTTGTCCAGTACCTTTCAACTCAGTTCA
CTGGAAATGTACATTGGGAGTACATATTCAGTGTTGGTTCTCAGTGTTAGTAACCACTTC
TGTCCTCAGANATGAGTGATGGTAACATTGTGTCAGAGTGGTTACTGAAGATCATAGCCT
TAACTTTTTTTATGCAAAAGATATAACCTGTTNCCCCTCCCAGTGAGCAGCATGGCCTGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATAATTTGGCCATCAGTTGCATCTCAGTCAGCAGATCCCATCAGGGCTCCCTCCCAGTCA
GCAGATCCCATAGGGGCTCCCTCAGCCCCGTTGCTACAGTTGCTTAACTATTCCTCAACC
AAGCCCTTGGGATTGGGCATTCCCCTCCACCCACCGCCCACCCCCACCCACTTGCTCTAT
AGGTTTTGAGCTTCCTCCAGTTCACAGCCATGATGCCCAGGGGTCTTTTCCTTTGGGATT
GATGCCATCGTTTCTGAGTTAGCATTATGCTGTGACAATATTAGGAGTTCTCCCAAGCCC
TGCAGTCCTCAGGCATTGCTTCCTGAGCAGATTGAGGCAAGCAGGCCAGGAATCCACCAT
GACATAAAGGGTCCGTCCTTTATGACCAGTGTGTGACTGTGCAGTCTAAGCAGGTACAGG
TCAATCACTTGCTATGCACCCCTTGACGTTTCCCAGTGATCTCACTCCAGGCTGCTCCAC
AGGGATGGCCCTGGTGTGCCAGCAGCAGCATGCTTTCAGGACTGTCTTAATTAACATCCT
CCTGCCACTTGGGGTCTGTCTAGGAGGAAACAAGGTCTAGGAAGGTACAAAGCCAGGTGG
CTAGGTTGGCCTTCAGTTAGAGCCCCATTTTACTTCAGAATGCAGGGCAATGGAAGAAAG
CAGGATCCTGAGGTTTCCAGTAGAAGTGCTGGCCTGTTCATTCTCAGTGAACTCCAAGTT
CATGGTAACAGCCCCTGCCATTAGCCAGAAGAGTTGTCCAGTACCTTTCAACTCAGTTCA
CTGGAAATGTACATTGGGAGTACATATTCAGTGTTGGTTCTCAGTGTTAGTAACCACTTC
TGTCCTCAGANATGAGTGATGGTAACATTGTGTCAGAGTGGTTACTGAAGATCATAGCCT
TAACTTTTTTTATGCAAAAGATATAACCTGTTNCCCCTCCCAGTGAGCAGCATGGCCTGC

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               193-288, - strand, RNAz p=0.875366
               

               
               773-924, + strand, RNAz p=0.999993

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               193-288, - strand, RNAz p=0.875366
               

               
               773-924, + strand, RNAz p=0.999993

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               878-964, + strand, RNAmicro p=0.998913
               

               
               888-990, - strand, RNAmicro p=0.998452

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               878-964, + strand, RNAmicro p=0.998913
               

               
               888-990, - strand, RNAmicro p=0.998452

Similar Transcript(s): 2 entry(ies)

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Similar Transcript(s): 2 entry(ies)

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               775-904, 150671 MARC 4BOV Bos taurus cDNA 5', mRNA sequence (gb|BE899965.1|), 
blast E-value=2e-40, identity=91.54% 
               

               
               775-904, 4063268 BARC 8BOV Bos taurus cDNA clone 8BOV_10D22 5', mRNA 
(gb|CK837978.1|), blast E-value=2e-40, identity=91.54%

Similar Transcript(s): 2 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               775-904, 150671 MARC 4BOV Bos taurus cDNA 5', mRNA sequence (gb|BE899965.1|), 
blast E-value=2e-40, identity=91.54% 
               

               
               775-904, 4063268 BARC 8BOV Bos taurus cDNA clone 8BOV_10D22 5', mRNA 
(gb|CK837978.1|), blast E-value=2e-40, identity=91.54%

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               38-960, gnl|bosTau2|chr10 (30159246-30158315)
               

               
               38-960, gnl|Hg17|chr15 (62248054-62247098)
               

               
               38-960, gnl|Mm7|chr9 (66071960-66072762)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               38-960, gnl|bosTau2|chr10 (30159246-30158315)
               

               
               38-960, gnl|Hg17|chr15 (62248054-62247098)
               

               
               38-960, gnl|Mm7|chr9 (66071960-66072762)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               eep (0.122564)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eep (0.122564)

	193-288, - strand, RNAz p=0.875366
	773-924, + strand, RNAz p=0.999993

	878-964, + strand, RNAmicro p=0.998913
	888-990, - strand, RNAmicro p=0.998452

	775-904, 150671 MARC 4BOV Bos taurus cDNA 5', mRNA sequence (gb\|BE899965.1\|), blast E-value=2e-40, identity=91.54%
	775-904, 4063268 BARC 8BOV Bos taurus cDNA clone 8BOV_10D22 5', mRNA (gb\|CK837978.1\|), blast E-value=2e-40, identity=91.54%

	38-960, gnl\|bosTau2\|chr10 (30159246-30158315)
	38-960, gnl\|Hg17\|chr15 (62248054-62247098)
	38-960, gnl\|Mm7\|chr9 (66071960-66072762)