Ss1.1-reep23c_i23.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCGGCAGGATTCAGCACTGAAAGCCCTGGGGACAGAAGGCCTCTTCCTCTTTTCCTCCCT GGACACTGACCAGGACATGTACATCAGCCCTGAGGAGTTCAAGCCCATCGCCGAGAAGCT GACAGGGTCAACTCCTTCGGCCAGCTACGAGGAGGAGGAGCTGCCCCCTGACCCCAGTGA GGAGACACTCACCATAGAAGCGCGATTCCAGCCTCTGCTCCCAGAGTCCATGACCAAGAG CAAAGATGGGTTCCTGGGGGTCTCCCGCCTGGCCCTGTCCGGCCTCCGCAACTGGACCTC CGCAGCCTCACCAAGTGCAGTGTTTGCCGCCCGCCACTTCCGGCCCTTCCTTCCCCCTCG AGGCCACGTGGAGCTGGGCGAGCCCTGGTGGATCATCCCCAGTGAGCTGAGCGTCTTCAC CGGCTATCTGTCCAACAACCGCTTCTACCCACCACCACCCAAGGGCAAGGAGGTCATCAT CCACCGGCTCCTGAGCATGTTCCACCCTCGGCCCTTCGTGAAGACCCGCTTTGCCCCTCA GGGGGCCGTCGCCTGCCTGACCGCCATCAGTGACTTCTACTACACCGTGATGTTCCGCAT CCACGCCGAGTTCCAGCTCAGTGAGCCGCCCGACTTCCCCTTCTGGTTCTCACCAGCTCA GTTCACCGGCCACATCATCCTCTCCAAAGACGCCACCCACGTCCGCGACTTCCGGCTCTT CGTGCCCAACCACAGGTCTCTGAATGTGGACATGGAGTGGCTATACGGGGCCAGTGAGAG CAGCAACATGGAGGTGGACATCGGCTACATACCCCAGATGGAGCTGGAGGCCATGGGCCC CTCAGTGCCCTCTGTGATCCTGGACGAGGACGGCAACATGATCGACAGCCGCCTGCCCTC GGGGGAGCCCCTCCAGTTTGTGTTTGAGGAGATCAAGTGGCAGCAGGAGCTGAGCTGGGA GGAGGCCACCCGGCGCCTGGAGGTGGCCATGTACCCCTTCAAGAAGGTCACCTACCTGCC GTTTACCGAGGCCTTTGAGCAAGC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCGGCAGGATTCAGCACTGAAAGCCCTGGGGACAGAAGGCCTCTTCCTCTTTTCCTCCCT GGACACTGACCAGGACATGTACATCAGCCCTGAGGAGTTCAAGCCCATCGCCGAGAAGCT GACAGGGTCAACTCCTTCGGCCAGCTACGAGGAGGAGGAGCTGCCCCCTGACCCCAGTGA GGAGACACTCACCATAGAAGCGCGATTCCAGCCTCTGCTCCCAGAGTCCATGACCAAGAG CAAAGATGGGTTCCTGGGGGTCTCCCGCCTGGCCCTGTCCGGCCTCCGCAACTGGACCTC CGCAGCCTCACCAAGTGCAGTGTTTGCCGCCCGCCACTTCCGGCCCTTCCTTCCCCCTCG AGGCCACGTGGAGCTGGGCGAGCCCTGGTGGATCATCCCCAGTGAGCTGAGCGTCTTCAC CGGCTATCTGTCCAACAACCGCTTCTACCCACCACCACCCAAGGGCAAGGAGGTCATCAT CCACCGGCTCCTGAGCATGTTCCACCCTCGGCCCTTCGTGAAGACCCGCTTTGCCCCTCA GGGGGCCGTCGCCTGCCTGACCGCCATCAGTGACTTCTACTACACCGTGATGTTCCGCAT CCACGCCGAGTTCCAGCTCAGTGAGCCGCCCGACTTCCCCTTCTGGTTCTCACCAGCTCA GTTCACCGGCCACATCATCCTCTCCAAAGACGCCACCCACGTCCGCGACTTCCGGCTCTT CGTGCCCAACCACAGGTCTCTGAATGTGGACATGGAGTGGCTATACGGGGCCAGTGAGAG CAGCAACATGGAGGTGGACATCGGCTACATACCCCAGATGGAGCTGGAGGCCATGGGCCC CTCAGTGCCCTCTGTGATCCTGGACGAGGACGGCAACATGATCGACAGCCGCCTGCCCTC GGGGGAGCCCCTCCAGTTTGTGTTTGAGGAGATCAAGTGGCAGCAGGAGCTGAGCTGGGA GGAGGCCACCCGGCGCCTGGAGGTGGCCATGTACCCCTTCAAGAAGGTCACCTACCTGCC GTTTACCGAGGCCTTTGAGCAAGC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 852-1008, + strand, RNAz p=0.680563 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 852-1008, + strand, RNAz p=0.680563 |
| Aligned organism(s): 40 entry(ies) | More info |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
| 4-126, gnl|bosTau2|chr2 (80007548-80007426) | |
| 4-126, gnl|canFam2|chr2 (77041069-77040930) | |
| 4-126, gnl|danRer3|chr17 (2745667-2745540) | |
| 4-126, gnl|fr1|chrUn (96898789-96898924) | |
| 4-126, gnl|galGal2|chr23 (1905781-1905643) | |
| 4-126, gnl|hg17|chr1 (25811665-25811804) | |
| 4-126, gnl|Hg17|chr1 (25811676-25811798) | |
| 4-126, gnl|loxAfr1|scaffold_14145 (33324-33207) | |
| 4-126, gnl|mm7|chr4 (133929988-133929849) | |
| 4-126, gnl|Mm7|chr4 (133929975-133929853) | |
| 4-126, gnl|monDom2|scaffold_91 (3148089-3148227) | |
| 4-126, gnl|panTro1|chr1 (26491107-26491246) | |
| 4-126, gnl|rheMac2|chr1 (28406597-28406736) | |
| 4-126, gnl|rn3|chr5 (153317699-153317560) | |
| 4-126, gnl|tetNig1|chr10 (6657996-6657861) | |
| 4-126, gnl|xenTro1|scaffold_318 (880959-881086) | |
| 259-474, gnl|bosTau2|chr2 (80000819-80000604) | |
| 259-474, gnl|Hg17|chr1 (25819216-25819428) | |
| 259-474, gnl|Mm7|chr4 (133924128-133923916) | |
| 597-737, gnl|bosTau2|chr2 (79999728-79999588) | |
| 597-737, gnl|canFam2|chr2 (77033561-77033411) | |
| 597-737, gnl|danRer3|chr17 (2744417-2744272) | |
| 597-737, gnl|dasNov1|scaffold_5367 (37390-37537) | |
| 597-737, gnl|fr1|chrUn (96899888-96900033) | |
| 597-737, gnl|galGal2|chr23 (1902264-1902114) | |
| 597-737, gnl|hg17|chr1 (25820318-25820468) | |
| 597-737, gnl|Hg17|chr1 (25820319-25820459) | |
| 597-737, gnl|loxAfr1|scaffold_14145 (25239-25092) | |
| 597-737, gnl|mm7|chr4 (133923163-133923013) | |
| 597-737, gnl|Mm7|chr4 (133923160-133923020) | |
| 597-737, gnl|monDom2|scaffold_91 (3154400-3154548) | |
| 597-737, gnl|oryCun1|scaffold_100480 (4407-4257) | |
| 597-737, gnl|panTro1|chr1 (26499698-26499848) | |
| 597-737, gnl|rheMac2|chr1 (28415455-28415605) | |
| 597-737, gnl|rn3|chr5 (153310662-153310512) | |
| 597-737, gnl|tetNig1|chr10 (6657061-6656916) | |
| 597-737, gnl|xenTro1|scaffold_318 (881548-881694) | |
| 813-1008, gnl|bosTau2|chr2 (79997313-79997118) | |
| 813-1008, gnl|Hg17|chr1 (25822323-25822518) | |
| 813-1008, gnl|Mm7|chr4 (133921343-133921148) |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 4-126, gnl|bosTau2|chr2 (80007548-80007426) | |
| 4-126, gnl|canFam2|chr2 (77041069-77040930) | |
| 4-126, gnl|danRer3|chr17 (2745667-2745540) | |
| 4-126, gnl|fr1|chrUn (96898789-96898924) | |
| 4-126, gnl|galGal2|chr23 (1905781-1905643) | |
| 4-126, gnl|hg17|chr1 (25811665-25811804) | |
| 4-126, gnl|Hg17|chr1 (25811676-25811798) | |
| 4-126, gnl|loxAfr1|scaffold_14145 (33324-33207) | |
| 4-126, gnl|mm7|chr4 (133929988-133929849) | |
| 4-126, gnl|Mm7|chr4 (133929975-133929853) | |
| 4-126, gnl|monDom2|scaffold_91 (3148089-3148227) | |
| 4-126, gnl|panTro1|chr1 (26491107-26491246) | |
| 4-126, gnl|rheMac2|chr1 (28406597-28406736) | |
| 4-126, gnl|rn3|chr5 (153317699-153317560) | |
| 4-126, gnl|tetNig1|chr10 (6657996-6657861) | |
| 4-126, gnl|xenTro1|scaffold_318 (880959-881086) | |
| 259-474, gnl|bosTau2|chr2 (80000819-80000604) | |
| 259-474, gnl|Hg17|chr1 (25819216-25819428) | |
| 259-474, gnl|Mm7|chr4 (133924128-133923916) | |
| 597-737, gnl|bosTau2|chr2 (79999728-79999588) | |
| 597-737, gnl|canFam2|chr2 (77033561-77033411) | |
| 597-737, gnl|danRer3|chr17 (2744417-2744272) | |
| 597-737, gnl|dasNov1|scaffold_5367 (37390-37537) | |
| 597-737, gnl|fr1|chrUn (96899888-96900033) | |
| 597-737, gnl|galGal2|chr23 (1902264-1902114) | |
| 597-737, gnl|hg17|chr1 (25820318-25820468) | |
| 597-737, gnl|Hg17|chr1 (25820319-25820459) | |
| 597-737, gnl|loxAfr1|scaffold_14145 (25239-25092) | |
| 597-737, gnl|mm7|chr4 (133923163-133923013) | |
| 597-737, gnl|Mm7|chr4 (133923160-133923020) | |
| 597-737, gnl|monDom2|scaffold_91 (3154400-3154548) | |
| 597-737, gnl|oryCun1|scaffold_100480 (4407-4257) | |
| 597-737, gnl|panTro1|chr1 (26499698-26499848) | |
| 597-737, gnl|rheMac2|chr1 (28415455-28415605) | |
| 597-737, gnl|rn3|chr5 (153310662-153310512) | |
| 597-737, gnl|tetNig1|chr10 (6657061-6656916) | |
| 597-737, gnl|xenTro1|scaffold_318 (881548-881694) | |
| 813-1008, gnl|bosTau2|chr2 (79997313-79997118) | |
| 813-1008, gnl|Hg17|chr1 (25822323-25822518) | |
| 813-1008, gnl|Mm7|chr4 (133921343-133921148) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| eep (0.122564) |