Non-Coding RNA Search

Ss1.1-reep23c_m10.5

Sequence:


               
               CGGACCCGCAGCTGCAGGTGGAGTGGCCTAGTGTTGAGCTGAAATGGCTCAAGCCTGATG
TTCCATGACCCAGGATACCAACAGGCACGCACGGGCTGCTGCTGTGGATGCTTTAAAACC
ACAAGGTGGTACAGGCCTGGAAGACCAGACATTCCCTCTGCCTGGATGTGTGGAAACTCC
CTGTCAACTTGATTGGCGGATCTGGGGGGGATCCACCCCCACCCACAAGGAAAGCAGTCT
GTTTTGTGGGTGCAGCTTTGGGTGCCTGCAAGCTGAAGGATGGCCACCCCTGTGGTCACC
AAGACGGCCTGGAAGCTGCAGGAGATCGTGGCCCATGCCAGCAATGTGTCCTCGCTGGTG
CTGGGCAAAGCCTCAGGCCGGCTGCTGGCCACCGGCGGGGATGACTGCCGGGTCAACCTG
TGGTCTGTCAACAAGCCCAACTGCATCATGAGCCTGACGGGTCACACGTCCCCAGTGGAG
AGCGTCCGTCTCAACACCCCCGAGGAGCTCATTGTGGCCGGTTCTCAGTCGGGCTCCATC
CGTGTCTGGGAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGGACCCGCAGCTGCAGGTGGAGTGGCCTAGTGTTGAGCTGAAATGGCTCAAGCCTGATG
TTCCATGACCCAGGATACCAACAGGCACGCACGGGCTGCTGCTGTGGATGCTTTAAAACC
ACAAGGTGGTACAGGCCTGGAAGACCAGACATTCCCTCTGCCTGGATGTGTGGAAACTCC
CTGTCAACTTGATTGGCGGATCTGGGGGGGATCCACCCCCACCCACAAGGAAAGCAGTCT
GTTTTGTGGGTGCAGCTTTGGGTGCCTGCAAGCTGAAGGATGGCCACCCCTGTGGTCACC
AAGACGGCCTGGAAGCTGCAGGAGATCGTGGCCCATGCCAGCAATGTGTCCTCGCTGGTG
CTGGGCAAAGCCTCAGGCCGGCTGCTGGCCACCGGCGGGGATGACTGCCGGGTCAACCTG
TGGTCTGTCAACAAGCCCAACTGCATCATGAGCCTGACGGGTCACACGTCCCCAGTGGAG
AGCGTCCGTCTCAACACCCCCGAGGAGCTCATTGTGGCCGGTTCTCAGTCGGGCTCCATC
CGTGTCTGGGAC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61854636|ref|XP_585646.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61854636|ref|XP_585646.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               136-324, + strand, RNAz p=0.8471

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               136-324, + strand, RNAz p=0.8471

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_005886, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_005886, +

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               26-324, gnl|bosTau2|chr18 (22647018-22647310)
               

               
               26-324, gnl|Hg17|chr16 (56328390-56328701)
               

               
               26-324, gnl|Mm7|chr8 (93671641-93671942)
               


               
               450-552, gnl|bosTau2|chr18 (22654097-22654199)
               

               
               450-552, gnl|canFam2|chr2 (61626581-61626454)
               

               
               450-552, gnl|danRer3|chr7 (43168290-43168421)
               

               
               450-552, gnl|echTel1|scaffold_289530 (44010-43882)
               

               
               450-552, gnl|fr1|chrUn (105518322-105518196)
               

               
               450-552, gnl|galGal2|chr11 (476453-476326)
               

               
               450-552, gnl|hg17|chr16 (56335804-56335931)
               

               
               450-552, gnl|Hg17|chr16 (56335806-56335908)
               

               
               450-552, gnl|mm7|chr8 (93679001-93679128)
               

               
               450-552, gnl|Mm7|chr8 (93679003-93679105)
               

               
               450-552, gnl|monDom2|scaffold_63 (7292357-7292484)
               

               
               450-552, gnl|oryCun1|scaffold_156873 (5447-5320)
               

               
               450-552, gnl|panTro1|chr18 (50449530-50449657)
               

               
               450-552, gnl|rheMac2|chr20 (56098943-56099070)
               

               
               450-552, gnl|rn3|chr19 (10370900-10370773)
               

               
               450-552, gnl|tetNig1|chrUn_random (6380541-6380666)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               26-324, gnl|bosTau2|chr18 (22647018-22647310)
               

               
               26-324, gnl|Hg17|chr16 (56328390-56328701)
               

               
               26-324, gnl|Mm7|chr8 (93671641-93671942)
               


               
               450-552, gnl|bosTau2|chr18 (22654097-22654199)
               

               
               450-552, gnl|canFam2|chr2 (61626581-61626454)
               

               
               450-552, gnl|danRer3|chr7 (43168290-43168421)
               

               
               450-552, gnl|echTel1|scaffold_289530 (44010-43882)
               

               
               450-552, gnl|fr1|chrUn (105518322-105518196)
               

               
               450-552, gnl|galGal2|chr11 (476453-476326)
               

               
               450-552, gnl|hg17|chr16 (56335804-56335931)
               

               
               450-552, gnl|Hg17|chr16 (56335806-56335908)
               

               
               450-552, gnl|mm7|chr8 (93679001-93679128)
               

               
               450-552, gnl|Mm7|chr8 (93679003-93679105)
               

               
               450-552, gnl|monDom2|scaffold_63 (7292357-7292484)
               

               
               450-552, gnl|oryCun1|scaffold_156873 (5447-5320)
               

               
               450-552, gnl|panTro1|chr18 (50449530-50449657)
               

               
               450-552, gnl|rheMac2|chr20 (56098943-56099070)
               

               
               450-552, gnl|rn3|chr19 (10370900-10370773)
               

               
               450-552, gnl|tetNig1|chrUn_random (6380541-6380666)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               eep (0.122564)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eep (0.122564)

	26-324, gnl\|bosTau2\|chr18 (22647018-22647310)
	26-324, gnl\|Hg17\|chr16 (56328390-56328701)
	26-324, gnl\|Mm7\|chr8 (93671641-93671942)

	450-552, gnl\|bosTau2\|chr18 (22654097-22654199)
	450-552, gnl\|canFam2\|chr2 (61626581-61626454)
	450-552, gnl\|danRer3\|chr7 (43168290-43168421)
	450-552, gnl\|echTel1\|scaffold_289530 (44010-43882)
	450-552, gnl\|fr1\|chrUn (105518322-105518196)
	450-552, gnl\|galGal2\|chr11 (476453-476326)
	450-552, gnl\|hg17\|chr16 (56335804-56335931)
	450-552, gnl\|Hg17\|chr16 (56335806-56335908)
	450-552, gnl\|mm7\|chr8 (93679001-93679128)
	450-552, gnl\|Mm7\|chr8 (93679003-93679105)
	450-552, gnl\|monDom2\|scaffold_63 (7292357-7292484)
	450-552, gnl\|oryCun1\|scaffold_156873 (5447-5320)
	450-552, gnl\|panTro1\|chr18 (50449530-50449657)
	450-552, gnl\|rheMac2\|chr20 (56098943-56099070)
	450-552, gnl\|rn3\|chr19 (10370900-10370773)
	450-552, gnl\|tetNig1\|chrUn_random (6380541-6380666)