Ss1.1-reep23c_n8.5
|
TCCCGGGTCGACCCACGCGTCCGAGATGACCTTCAAGACCTTTCGTCCGCAAGAGCTCTA
GAGCACTCTGAGGAGCCGAAGGCAGTGTATATATAAAAGTGAGCTGCATCTCCACGGGTT
CAGTCTCAGAGCACCAGCTGGTGAGCAATGCAAGGAGCAGCCTTGTAACTAACTTGCATC
ATCTTCAGCATGAAGATAGCCACAGTGCCATTGCTTCTGATCCTGGCTCTTTGCCTCATA
CAAGATGCTGCCAGTGAAGGTGAAAATCAGGAAACATGCAGCGAATATCGGGCACTGATG
AAAAATGGAAAGTTGTTCTGTTCCCAAGATAAAACACTTTTTCAAAGCCCCGAGGGAATG
GTGTTCATCAACAGATGTGCCACGTGCAAAATGATCTTGGAAAAAGAAGCCAAATCCCAG
AGGAGGGCCAGGCATTTAGCAGGAGCCCCCAGGGCCACTGTCCCCGCAAAGGATATGTGC
AGTGCTTTTCGGCCTTACGTAAAGGATGGAAGACTTGGGTGCACGCGGGAAAATGACCCA
GTGCTCGGTCCTGATGGAAGGACACATGGCAATAAATGTGCAATGTGTGCGGAGCTGTTC
TTGAAAGAAGCTGAAGAAAATGCCAAGCGAGAAAGTGAAGCCAGAATTCGCCGCAGTGCT
GAAAAGGATCTTTGCAAGGAGTATGAAAGCCAAGTGAGGAATGGAAGACTTTATTGTACC
CGGGAGAGCGACCCAGTTCGTGGCCCTGATGGCAGGATGCATGGCAAC
|
Blue-coloured subsequences are predicted RNA structures by RNAz
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TCCCGGGTCGACCCACGCGTCCGAGATGACCTTCAAGACCTTTCGTCCGCAAGAGCTCTA
GAGCACTCTGAGGAGCCGAAGGCAGTGTATATATAAAAGTGAGCTGCATCTCCACGGGTT
CAGTCTCAGAGCACCAGCTGGTGAGCAATGCAAGGAGCAGCCTTGTAACTAACTTGCATC
ATCTTCAGCATGAAGATAGCCACAGTGCCATTGCTTCTGATCCTGGCTCTTTGCCTCATA
CAAGATGCTGCCAGTGAAGGTGAAAATCAGGAAACATGCAGCGAATATCGGGCACTGATG
AAAAATGGAAAGTTGTTCTGTTCCCAAGATAAAACACTTTTTCAAAGCCCCGAGGGAATG
GTGTTCATCAACAGATGTGCCACGTGCAAAATGATCTTGGAAAAAGAAGCCAAATCCCAG
AGGAGGGCCAGGCATTTAGCAGGAGCCCCCAGGGCCACTGTCCCCGCAAAGGATATGTGC
AGTGCTTTTCGGCCTTACGTAAAGGATGGAAGACTTGGGTGCACGCGGGAAAATGACCCA
GTGCTCGGTCCTGATGGAAGGACACATGGCAATAAATGTGCAATGTGTGCGGAGCTGTTC
TTGAAAGAAGCTGAAGAAAATGCCAAGCGAGAAAGTGAAGCCAGAATTCGCCGCAGTGCT
GAAAAGGATCTTTGCAAGGAGTATGAAAGCCAAGTGAGGAATGGAAGACTTTATTGTACC
CGGGAGAGCGACCCAGTTCGTGGCCCTGATGGCAGGATGCATGGCAAC
|
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gi|61862290|ref|XP_592937.1| |
Protein identifier
|
gi|61862290|ref|XP_592937.1| |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
83-247, gnl|bosTau2|chr7 (41357337-41357501) |
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83-247, gnl|Hg17|chr5 (147423701-147423858) |
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83-247, gnl|Mm7|chr18 (44340692-44340851) |
| |
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269-399, gnl|bosTau2|chr7 (41362885-41363015) |
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269-399, gnl|Hg17|chr5 (147430077-147430207) |
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269-399, gnl|Mm7|chr18 (44344485-44344615) |
| |
|
470-599, gnl|bosTau2|chr7 (41374926-41375055) |
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470-599, gnl|canFam2|chr2 (45161998-45162166) |
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470-599, gnl|dasNov1|scaffold_156557 (3672-3840) |
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470-599, gnl|echTel1|scaffold_276367 (13275-13443) |
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470-599, gnl|hg17|chr5 (147449217-147449385) |
|
470-599, gnl|Hg17|chr5 (147449248-147449377) |
|
470-599, gnl|loxAfr1|scaffold_23506 (33710-33861) |
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470-599, gnl|mm7|chr18 (44359635-44359803) |
|
470-599, gnl|Mm7|chr18 (44359666-44359795) |
|
470-599, gnl|oryCun1|scaffold_169019 (16666-16498) |
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470-599, gnl|panTro1|chr4 (154334549-154334717) |
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470-599, gnl|rheMac2|chr6 (144523879-144524047) |
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470-599, gnl|rn3|chr18 (37617483-37617651) |
| |
|
663-768, gnl|bosTau2|chr7 (41383069-41383174) |
|
663-768, gnl|Hg17|chr5 (147454106-147454211) |
|
663-768, gnl|Mm7|chr18 (44363780-44363885) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
83-247, gnl|bosTau2|chr7 (41357337-41357501) |
|
83-247, gnl|Hg17|chr5 (147423701-147423858) |
|
83-247, gnl|Mm7|chr18 (44340692-44340851) |
| |
|
269-399, gnl|bosTau2|chr7 (41362885-41363015) |
|
269-399, gnl|Hg17|chr5 (147430077-147430207) |
|
269-399, gnl|Mm7|chr18 (44344485-44344615) |
| |
|
470-599, gnl|bosTau2|chr7 (41374926-41375055) |
|
470-599, gnl|canFam2|chr2 (45161998-45162166) |
|
470-599, gnl|dasNov1|scaffold_156557 (3672-3840) |
|
470-599, gnl|echTel1|scaffold_276367 (13275-13443) |
|
470-599, gnl|hg17|chr5 (147449217-147449385) |
|
470-599, gnl|Hg17|chr5 (147449248-147449377) |
|
470-599, gnl|loxAfr1|scaffold_23506 (33710-33861) |
|
470-599, gnl|mm7|chr18 (44359635-44359803) |
|
470-599, gnl|Mm7|chr18 (44359666-44359795) |
|
470-599, gnl|oryCun1|scaffold_169019 (16666-16498) |
|
470-599, gnl|panTro1|chr4 (154334549-154334717) |
|
470-599, gnl|rheMac2|chr6 (144523879-144524047) |
|
470-599, gnl|rn3|chr18 (37617483-37617651) |
| |
|
663-768, gnl|bosTau2|chr7 (41383069-41383174) |
|
663-768, gnl|Hg17|chr5 (147454106-147454211) |
|
663-768, gnl|Mm7|chr18 (44363780-44363885) |
|
nep (0.183925) |
|
eep (0.122564) |
|
nep (0.183925) |
|
eep (0.122564) |
