Non-Coding RNA Search

Ss1.1-reep24c_a22.5

Sequence:


               
               CTCTTCTGAAGTAAGATTTTTCTACACCGGTAGCCTTCGCTGTCTGTCAGTCAGGACCTT
CTGGTATAAGTGATGTAAGATAACCGTACAATATTAATGCATGCTATTCCATAATGCTTA
GTGAACTGTATGAATATTACTCAGAATTATGTTAGTCTTTTTTTCTGACTGGGTTCTTGT
CAGCTAGGTTTAAAGGTATTTCACTGAGAACGCAAATTCTGTCTTTTCTTGATTTCAGCT
GTTTTCAGTATTTGGGAGGTATACATTTACTTAAATTCAGTATTACTTGTGTTTTTTGTT
TTTTTGTTTTTTGTTTTCTTTTTCCTAGGGGACAAGCATGGGTGTTGGGTTTCAGAAATC
AGTCCCTGGCAAGACTTGTGTCTCAAATCGACCATTGGAATTTCAAGAACTGCTCTGAAG
ACACCGAGAACCTTTCCAGATGAGGGACATTTTCCTTCACCCTCAACGGAAGCTTTGCTG
ATCCTGAGGGGGTTTCTTAATGGACAGTGTTCAGCCAGGTACCCATGCTTGATCCGTCTT
CACACCAGACTTCCTCATATTAAAAGGAAAAAAAAAACGAAAAAAAAAAAATTCTTTACG
AAATCACGTGGCTATTTAGTTTCATGCACAGTTGCAATATTTTCTTCAAAAATAAAACTC
TGTACAAACTTGGGGCCCGATTCATAAGAAAAAGAAATTGGCTATTAACACGGGATTTTT
TTAAGTGTTAACTTTTTGGGGGGCTAAATTTGAAACTACTGCTTCCCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCTTCTGAAGTAAGATTTTTCTACACCGGTAGCCTTCGCTGTCTGTCAGTCAGGACCTT
CTGGTATAAGTGATGTAAGATAACCGTACAATATTAATGCATGCTATTCCATAATGCTTA
GTGAACTGTATGAATATTACTCAGAATTATGTTAGTCTTTTTTTCTGACTGGGTTCTTGT
CAGCTAGGTTTAAAGGTATTTCACTGAGAACGCAAATTCTGTCTTTTCTTGATTTCAGCT
GTTTTCAGTATTTGGGAGGTATACATTTACTTAAATTCAGTATTACTTGTGTTTTTTGTT
TTTTTGTTTTTTGTTTTCTTTTTCCTAGGGGACAAGCATGGGTGTTGGGTTTCAGAAATC
AGTCCCTGGCAAGACTTGTGTCTCAAATCGACCATTGGAATTTCAAGAACTGCTCTGAAG
ACACCGAGAACCTTTCCAGATGAGGGACATTTTCCTTCACCCTCAACGGAAGCTTTGCTG
ATCCTGAGGGGGTTTCTTAATGGACAGTGTTCAGCCAGGTACCCATGCTTGATCCGTCTT
CACACCAGACTTCCTCATATTAAAAGGAAAAAAAAAACGAAAAAAAAAAAATTCTTTACG
AAATCACGTGGCTATTTAGTTTCATGCACAGTTGCAATATTTTCTTCAAAAATAAAACTC
TGTACAAACTTGGGGCCCGATTCATAAGAAAAAGAAATTGGCTATTAACACGGGATTTTT
TTAAGTGTTAACTTTTTGGGGGGCTAAATTTGAAACTACTGCTTCCCA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-768, gnl|bosTau2|chr3 (56993991-56993217)
               

               
               1-768, gnl|Hg17|chr1 (61638401-61639162)
               

               
               1-768, gnl|Mm7|chr4 (97509458-97510261)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-768, gnl|bosTau2|chr3 (56993991-56993217)
               

               
               1-768, gnl|Hg17|chr1 (61638401-61639162)
               

               
               1-768, gnl|Mm7|chr4 (97509458-97510261)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               eep (0.245128)
               

               
               cbr (0.127975)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eep (0.245128)
               

               
               cbr (0.127975)

	1-768, gnl\|bosTau2\|chr3 (56993991-56993217)
	1-768, gnl\|Hg17\|chr1 (61638401-61639162)
	1-768, gnl\|Mm7\|chr4 (97509458-97510261)