Non-Coding RNA Search

Ss1.1-reep25c_d13.5

Sequence:


               
               CTGGCCTCTACCGAGAGGCTCTGGCACTCTGGGCCAACGCTTGGCAGCTGCAGGCCCAGC
TGGGCATCCCCTCGGGCCCAGACCGCCCTCTGCTGACCCTGGCGGGGCTGGCCGTGTGCC
ACCAGGAGCTAGAGGACCCTGGGGAGGCCCGGGCATGCTGTGAGAAGGCCCTACAGCTGC
TGGGGAACAAGAACCCTCACCCCTTGCTGGCACCCTTTCTGGAGGCCCACGTGCGGCTCT
CCTGGCGCCTGGGCCTGGACAAACGCCAGTCGGAGGCCCGGCTGCAGGCCCTGCAGGAGG
CAGGCCTGACCCCCACGCCACCCCCAAGTCTCAAAGAATTACTCATCAAGGAGGTACTGG
ACTAGCCTGGCCCAGACCTGAGGCCACTGCAGGGAGAGGCACTGCCCCAGGGTGAGGGGT
GGGATGAGGGTGGATGAGGACATGGACAGTAGTTGAGAGGCTACCAGGGGTGCTGGGAAC
CCCCAGAAGTTGTGCAAAGAATTTGAAGCAGACTGAGGAAACGCGCTGCTTCTGTTGAGA
GCTGGGCTCAGGACAAGCTTTGGCTGGGATGGTGCAGGGAGAGAGTCTGATGCCGCTGCC
CCAGGTTGGGGTCAACGTTCCCTTTCCCTTGGGCCTCCAAACCCATAGGCAGCCTGGCCA
GAGGGCCAGGGACTCTGCCCCAGGAGTCCTGGAGTCGATGGCTGGAGGGAGGGCTGCAGT
TCTGGCCCCAGGGGGATTAAAGAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGGCCTCTACCGAGAGGCTCTGGCACTCTGGGCCAACGCTTGGCAGCTGCAGGCCCAGC
TGGGCATCCCCTCGGGCCCAGACCGCCCTCTGCTGACCCTGGCGGGGCTGGCCGTGTGCC
ACCAGGAGCTAGAGGACCCTGGGGAGGCCCGGGCATGCTGTGAGAAGGCCCTACAGCTGC
TGGGGAACAAGAACCCTCACCCCTTGCTGGCACCCTTTCTGGAGGCCCACGTGCGGCTCT
CCTGGCGCCTGGGCCTGGACAAACGCCAGTCGGAGGCCCGGCTGCAGGCCCTGCAGGAGG
CAGGCCTGACCCCCACGCCACCCCCAAGTCTCAAAGAATTACTCATCAAGGAGGTACTGG
ACTAGCCTGGCCCAGACCTGAGGCCACTGCAGGGAGAGGCACTGCCCCAGGGTGAGGGGT
GGGATGAGGGTGGATGAGGACATGGACAGTAGTTGAGAGGCTACCAGGGGTGCTGGGAAC
CCCCAGAAGTTGTGCAAAGAATTTGAAGCAGACTGAGGAAACGCGCTGCTTCTGTTGAGA
GCTGGGCTCAGGACAAGCTTTGGCTGGGATGGTGCAGGGAGAGAGTCTGATGCCGCTGCC
CCAGGTTGGGGTCAACGTTCCCTTTCCCTTGGGCCTCCAAACCCATAGGCAGCCTGGCCA
GAGGGCCAGGGACTCTGCCCCAGGAGTCCTGGAGTCGATGGCTGGAGGGAGGGCTGCAGT
TCTGGCCCCAGGGGGATTAAAGAC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|17160914|gb|AAH17623.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|17160914|gb|AAH17623.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               619-742, - strand, RNAz p=0.968084

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               619-742, - strand, RNAz p=0.968084

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               127-742, gnl|bosTau2|chr13 (54448227-54448854)
               

               
               127-742, gnl|Hg17|chr20 (43903121-43903757)
               

               
               127-742, gnl|Mm7|chr2 (164532803-164533412)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               127-742, gnl|bosTau2|chr13 (54448227-54448854)
               

               
               127-742, gnl|Hg17|chr20 (43903121-43903757)
               

               
               127-742, gnl|Mm7|chr2 (164532803-164533412)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               jca (0.22792)
               

               
               cov (0.132153)
               

               
               eep (0.122564)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               jca (0.22792)
               

               
               cov (0.132153)
               

               
               eep (0.122564)

	127-742, gnl\|bosTau2\|chr13 (54448227-54448854)
	127-742, gnl\|Hg17\|chr20 (43903121-43903757)
	127-742, gnl\|Mm7\|chr2 (164532803-164533412)