Ss1.1-reep25c_i8.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GAGGAAAAGAAGCGGCTGCTGATTAAACAGGTGCGGGAGCTCGAGGCAGAGCTGGAGGAT GAGCGCAAACAGCGAGCCCTTGCTGTCGCTTCAAAGAAGAAAATGGAAATAGACCTGAAG GACCTGGAAGCTCAAATCGAGGCGGCGAACAAGGCTCGGGATGAAGTGATCAAGCAGCTT CGCAAACTTCAGGCTCAGATGAAGGACTACCAACGTGAATTAGAAGAAGCACGTGCATCC CGTGATGAGATTTTTGCTCAATCCAAAGAGAGTGAAAAGAAATTAAAGAGTCTGGAAGCA GAAATTCTTCAATTGCAGGAGGAACTTGCCTCGTCTGAGCGAGCCCGCCGACACGCCGAG CAGGAGAGAGACGAGCTGGCGGACGAGATCGCCAACAGCGCCTCTGGCAAGTCTGCGCTG CTGGACGAGAAGCGGCGTCTAGAGGCGCGAATCGCGCAGCTGGAGGAGGAGCTGGAAGAG GAGCAGAGCAACATGGAGCTGCTCAACGACCGCTTCCGCAAGACCACGCTGCAGGTGGAC ACGCTGAACGCAGAGCTGGCGGCCGAGCGCAGCGCCGCCCAGAAGAGCGACAACGCGCGC CAGCAGCTGGAACGGCAGAACAAGGAGCTGAAGGCCAAGCTGCAGGAGCTGGAGGGCGCT GTCAAGTCCAAGTTCAAGGCCACCATCTCAGCCCTGGAAGCCAAGATTGGGCAGCTAGAG GAGCAGCTTGAGCAGGAGGCCAAGGAAAGAGCAGCCGCCAACAAACTGGTCCGCCGCACC GAGAAGAAGCTGAAGGAGATCTTCATGCAGGTGGAAGACGAGCGCCGCCACGCAGACCAG TATAAAGAACAGATGGAAAAGGCCAACGCCAGGATGAAGCAGCTCAAGCGGCAGCTGGAG GAAGCGGAAGAAGAAGCCACACGTGCCAACGCGTCTCGGCGCAAACTCCAGCGGGAACTG GATGACGCCACCGAGGCCAACGAGGGCCTGAGCCGCGAGGTCAGCACCCTGAAGAACCGG CTGAGGCGAGGCGGCCCCATCAGC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GAGGAAAAGAAGCGGCTGCTGATTAAACAGGTGCGGGAGCTCGAGGCAGAGCTGGAGGAT GAGCGCAAACAGCGAGCCCTTGCTGTCGCTTCAAAGAAGAAAATGGAAATAGACCTGAAG GACCTGGAAGCTCAAATCGAGGCGGCGAACAAGGCTCGGGATGAAGTGATCAAGCAGCTT CGCAAACTTCAGGCTCAGATGAAGGACTACCAACGTGAATTAGAAGAAGCACGTGCATCC CGTGATGAGATTTTTGCTCAATCCAAAGAGAGTGAAAAGAAATTAAAGAGTCTGGAAGCA GAAATTCTTCAATTGCAGGAGGAACTTGCCTCGTCTGAGCGAGCCCGCCGACACGCCGAG CAGGAGAGAGACGAGCTGGCGGACGAGATCGCCAACAGCGCCTCTGGCAAGTCTGCGCTG CTGGACGAGAAGCGGCGTCTAGAGGCGCGAATCGCGCAGCTGGAGGAGGAGCTGGAAGAG GAGCAGAGCAACATGGAGCTGCTCAACGACCGCTTCCGCAAGACCACGCTGCAGGTGGAC ACGCTGAACGCAGAGCTGGCGGCCGAGCGCAGCGCCGCCCAGAAGAGCGACAACGCGCGC CAGCAGCTGGAACGGCAGAACAAGGAGCTGAAGGCCAAGCTGCAGGAGCTGGAGGGCGCT GTCAAGTCCAAGTTCAAGGCCACCATCTCAGCCCTGGAAGCCAAGATTGGGCAGCTAGAG GAGCAGCTTGAGCAGGAGGCCAAGGAAAGAGCAGCCGCCAACAAACTGGTCCGCCGCACC GAGAAGAAGCTGAAGGAGATCTTCATGCAGGTGGAAGACGAGCGCCGCCACGCAGACCAG TATAAAGAACAGATGGAAAAGGCCAACGCCAGGATGAAGCAGCTCAAGCGGCAGCTGGAG GAAGCGGAAGAAGAAGCCACACGTGCCAACGCGTCTCGGCGCAAACTCCAGCGGGAACTG GATGACGCCACCGAGGCCAACGAGGGCCTGAGCCGCGAGGTCAGCACCCTGAAGAACCGG CTGAGGCGAGGCGGCCCCATCAGC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 608-727, - strand, RNAz p=0.771875 | |
| 630-747, - strand, RNAz p=0.955099 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 608-727, - strand, RNAz p=0.771875 | |
| 630-747, - strand, RNAz p=0.955099 |
| Aligned organism(s): 60 entry(ies) | More info |
| Aligned organism(s): 60 entry(ies) | Help | Less info |
| 42-193, gnl|bosTau2|chr25 (16265249-16265098) | |
| 42-193, gnl|canFam2|chr6 (31175317-31175135) | |
| 42-193, gnl|danRer3|chr3 (32377795-32377952) | |
| 42-193, gnl|dasNov1|scaffold_13706 (8413-8581) | |
| 42-193, gnl|echTel1|scaffold_271273 (21-205) | |
| 42-193, gnl|fr1|chrUn (285974739-285974599) | |
| 42-193, gnl|galGal2|chr14 (9609897-9610078) | |
| 42-193, gnl|hg17|chr16 (15721507-15721689) | |
| 42-193, gnl|Hg17|chr16 (15721659-15721508) | |
| 42-193, gnl|loxAfr1|scaffold_13931 (1431-1600) | |
| 42-193, gnl|mm7|chr16 (13751613-13751795) | |
| 42-193, gnl|Mm7|chr16 (13751765-13751614) | |
| 42-193, gnl|monDom2|scaffold_17 (27556801-27556617) | |
| 42-193, gnl|oryCun1|scaffold_200334 (139483-139301) | |
| 42-193, gnl|panTro1|chr18 (16092408-16092590) | |
| 42-193, gnl|rheMac2|chr20 (15438138-15438320) | |
| 42-193, gnl|rn3|chr10 (766787-766609) | |
| 42-193, gnl|tetNig1|chrUn_random (27308349-27308191) | |
| 42-193, gnl|xenTro1|scaffold_214 (13996-14172) | |
| 529-747, gnl|bosTau2|chr2 (77856160-77855942) | |
| 529-747, gnl|canFam2|chr5 (36239529-36239668) | |
| 529-747, gnl|danRer3|chr6 (3597231-3597370) | |
| 529-747, gnl|dasNov1|scaffold_58419 (3701-3562) | |
| 529-747, gnl|echTel1|scaffold_155681 (778-917) | |
| 529-747, gnl|fr1|chrUn (119941100-119940961) | |
| 529-747, gnl|galGal2|chr18 (1660334-1660473) | |
| 529-747, gnl|hg17|chr17 (8324149-8324288) | |
| 529-747, gnl|Hg17|chr17 (8324367-8324149) | |
| 529-747, gnl|loxAfr1|scaffold_1864 (24617-24478) | |
| 529-747, gnl|mm7|chr11 (68893585-68893446) | |
| 529-747, gnl|Mm7|chr11 (68893364-68893583) | |
| 529-747, gnl|monDom2|scaffold_66 (5980681-5980820) | |
| 529-747, gnl|oryCun1|scaffold_173547 (83678-83539) | |
| 529-747, gnl|panTro1|chr19_random (30125948-30125809) | |
| 529-747, gnl|rheMac2|chr16 (8227632-8227771) | |
| 529-747, gnl|rn3|chr10 (55584766-55584627) | |
| 529-747, gnl|tetNig1|chrUn_random (27309322-27309118) | |
| 529-747, gnl|xenTro1|scaffold_270 (705341-705480) | |
| 532-742, gnl|bosTau2|chr25 (16262838-16262628) | |
| 532-742, gnl|canFam2|chr6 (31177609-31177388) | |
| 532-742, gnl|danRer3|chr3 (32376928-32377142) | |
| 532-742, gnl|dasNov1|scaffold_13706 (5748-5970) | |
| 532-742, gnl|echTel1|scaffold_155681 (774-995) | |
| 532-742, gnl|fr1|chrUn (285975625-285975408) | |
| 532-742, gnl|galGal2|chr14 (9607792-9608017) | |
| 532-742, gnl|hg17|chr16 (15718490-15718711) | |
| 532-742, gnl|Hg17|chr16 (15718709-15718499) | |
| 532-742, gnl|loxAfr1|scaffold_85771 (437-658) | |
| 532-742, gnl|mm7|chr16 (13748563-13748784) | |
| 532-742, gnl|Mm7|chr16 (13748782-13748572) | |
| 532-742, gnl|monDom2|scaffold_17 (27560099-27559884) | |
| 532-742, gnl|oryCun1|scaffold_200334 (142242-142021) | |
| 532-742, gnl|panTro1|chr18 (16089391-16089612) | |
| 532-742, gnl|rheMac2|chr20 (15435112-15435333) | |
| 532-742, gnl|rn3|chr10 (769604-769383) | |
| 532-742, gnl|tetNig1|chrUn_random (27309322-27309040) | |
| 532-742, gnl|xenTro1|scaffold_214 (12879-13100) | |
| 848-1037, gnl|bosTau2|chr18 (49173213-49173402) | |
| 848-1037, gnl|Hg17|chr19 (55504070-55504258) | |
| 848-1037, gnl|Mm7|chr7 (40781327-40781148) |
| Aligned organism(s): 60 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 42-193, gnl|bosTau2|chr25 (16265249-16265098) | |
| 42-193, gnl|canFam2|chr6 (31175317-31175135) | |
| 42-193, gnl|danRer3|chr3 (32377795-32377952) | |
| 42-193, gnl|dasNov1|scaffold_13706 (8413-8581) | |
| 42-193, gnl|echTel1|scaffold_271273 (21-205) | |
| 42-193, gnl|fr1|chrUn (285974739-285974599) | |
| 42-193, gnl|galGal2|chr14 (9609897-9610078) | |
| 42-193, gnl|hg17|chr16 (15721507-15721689) | |
| 42-193, gnl|Hg17|chr16 (15721659-15721508) | |
| 42-193, gnl|loxAfr1|scaffold_13931 (1431-1600) | |
| 42-193, gnl|mm7|chr16 (13751613-13751795) | |
| 42-193, gnl|Mm7|chr16 (13751765-13751614) | |
| 42-193, gnl|monDom2|scaffold_17 (27556801-27556617) | |
| 42-193, gnl|oryCun1|scaffold_200334 (139483-139301) | |
| 42-193, gnl|panTro1|chr18 (16092408-16092590) | |
| 42-193, gnl|rheMac2|chr20 (15438138-15438320) | |
| 42-193, gnl|rn3|chr10 (766787-766609) | |
| 42-193, gnl|tetNig1|chrUn_random (27308349-27308191) | |
| 42-193, gnl|xenTro1|scaffold_214 (13996-14172) | |
| 529-747, gnl|bosTau2|chr2 (77856160-77855942) | |
| 529-747, gnl|canFam2|chr5 (36239529-36239668) | |
| 529-747, gnl|danRer3|chr6 (3597231-3597370) | |
| 529-747, gnl|dasNov1|scaffold_58419 (3701-3562) | |
| 529-747, gnl|echTel1|scaffold_155681 (778-917) | |
| 529-747, gnl|fr1|chrUn (119941100-119940961) | |
| 529-747, gnl|galGal2|chr18 (1660334-1660473) | |
| 529-747, gnl|hg17|chr17 (8324149-8324288) | |
| 529-747, gnl|Hg17|chr17 (8324367-8324149) | |
| 529-747, gnl|loxAfr1|scaffold_1864 (24617-24478) | |
| 529-747, gnl|mm7|chr11 (68893585-68893446) | |
| 529-747, gnl|Mm7|chr11 (68893364-68893583) | |
| 529-747, gnl|monDom2|scaffold_66 (5980681-5980820) | |
| 529-747, gnl|oryCun1|scaffold_173547 (83678-83539) | |
| 529-747, gnl|panTro1|chr19_random (30125948-30125809) | |
| 529-747, gnl|rheMac2|chr16 (8227632-8227771) | |
| 529-747, gnl|rn3|chr10 (55584766-55584627) | |
| 529-747, gnl|tetNig1|chrUn_random (27309322-27309118) | |
| 529-747, gnl|xenTro1|scaffold_270 (705341-705480) | |
| 532-742, gnl|bosTau2|chr25 (16262838-16262628) | |
| 532-742, gnl|canFam2|chr6 (31177609-31177388) | |
| 532-742, gnl|danRer3|chr3 (32376928-32377142) | |
| 532-742, gnl|dasNov1|scaffold_13706 (5748-5970) | |
| 532-742, gnl|echTel1|scaffold_155681 (774-995) | |
| 532-742, gnl|fr1|chrUn (285975625-285975408) | |
| 532-742, gnl|galGal2|chr14 (9607792-9608017) | |
| 532-742, gnl|hg17|chr16 (15718490-15718711) | |
| 532-742, gnl|Hg17|chr16 (15718709-15718499) | |
| 532-742, gnl|loxAfr1|scaffold_85771 (437-658) | |
| 532-742, gnl|mm7|chr16 (13748563-13748784) | |
| 532-742, gnl|Mm7|chr16 (13748782-13748572) | |
| 532-742, gnl|monDom2|scaffold_17 (27560099-27559884) | |
| 532-742, gnl|oryCun1|scaffold_200334 (142242-142021) | |
| 532-742, gnl|panTro1|chr18 (16089391-16089612) | |
| 532-742, gnl|rheMac2|chr20 (15435112-15435333) | |
| 532-742, gnl|rn3|chr10 (769604-769383) | |
| 532-742, gnl|tetNig1|chrUn_random (27309322-27309040) | |
| 532-742, gnl|xenTro1|scaffold_214 (12879-13100) | |
| 848-1037, gnl|bosTau2|chr18 (49173213-49173402) | |
| 848-1037, gnl|Hg17|chr19 (55504070-55504258) | |
| 848-1037, gnl|Mm7|chr7 (40781327-40781148) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| eep (0.122564) | |
| eru (0.120048) |