Non-Coding RNA Search

Ss1.1-reep25c_k4.5

Sequence:


               
               CCGCGGGATTGGCTGCAGCACTCGCGTGTCAGGGGTTGCTAGGCTCCGGCCGCGCGCCCC
GCCCTCGCGCTCGGCGCCCTCTCACCGCTCGGGTCTCTGCTCTCCAGGAAGATAAGCCTA
TTAAAACAGCCTAGCTATAGGAGGTGAGGCTCTGGGTGCTCTGGGATGGAGCAGGTGTGC
AGAGGGTGAGGACCCATTGCTGGGACCACGTCGCTTGCTTCCTTTCTTAGAGAGACTATC
CACTTGAACCTGGGATGAGGATGTCTGCGGGCCTCTCGCTGCTGATCCCCCTCTGGGGGA
GGACCTTTCTCCTTCTGCTCTCCGTGGCTGTGACTCAGTCCCGTTGGCCCAGTGAACCTT
CGGACGCTGTCAGGGACTGGGAGAACCAGCTTGAGGCGTCCATGCACTCAGTGCTCTCAG
ACCTCCATGAGGCTGTTCCCACAGTGGTTGGCATTCCTGATGGCACAGCCGTCGTTGGAC
GCTCATTTCGAGTGACCATTCCAACAGATTTAATTGCCTCCGGTGGAGAAATCATCAAGG
TGTCAGCAGCAGGGAAGGAAGCCTTACCATCCTGGCTGCACTGGGACCCCCAGAGCCACA
CCCTGGAGGGTCTCCCTCTTGACACTGATAAGGGTGTGCATTACATTTCGGTGAGTGCTG
CACGGCTGGGAGCCAACGGGAGCCACGTCCCCCAGACTTCAAGTGTGTTCTCTATCGAGG
TCTACCCTGAAGACCACAGTGAGCCACAGTCTGTGCGAGCAGCGTCAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCGCGGGATTGGCTGCAGCACTCGCGTGTCAGGGGTTGCTAGGCTCCGGCCGCGCGCCCC
GCCCTCGCGCTCGGCGCCCTCTCACCGCTCGGGTCTCTGCTCTCCAGGAAGATAAGCCTA
TTAAAACAGCCTAGCTATAGGAGGTGAGGCTCTGGGTGCTCTGGGATGGAGCAGGTGTGC
AGAGGGTGAGGACCCATTGCTGGGACCACGTCGCTTGCTTCCTTTCTTAGAGAGACTATC
CACTTGAACCTGGGATGAGGATGTCTGCGGGCCTCTCGCTGCTGATCCCCCTCTGGGGGA
GGACCTTTCTCCTTCTGCTCTCCGTGGCTGTGACTCAGTCCCGTTGGCCCAGTGAACCTT
CGGACGCTGTCAGGGACTGGGAGAACCAGCTTGAGGCGTCCATGCACTCAGTGCTCTCAG
ACCTCCATGAGGCTGTTCCCACAGTGGTTGGCATTCCTGATGGCACAGCCGTCGTTGGAC
GCTCATTTCGAGTGACCATTCCAACAGATTTAATTGCCTCCGGTGGAGAAATCATCAAGG
TGTCAGCAGCAGGGAAGGAAGCCTTACCATCCTGGCTGCACTGGGACCCCCAGAGCCACA
CCCTGGAGGGTCTCCCTCTTGACACTGATAAGGGTGTGCATTACATTTCGGTGAGTGCTG
CACGGCTGGGAGCCAACGGGAGCCACGTCCCCCAGACTTCAAGTGTGTTCTCTATCGAGG
TCTACCCTGAAGACCACAGTGAGCCACAGTCTGTGCGAGCAGCGTCAC

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|14571902|gb|AAK67315.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|14571902|gb|AAK67315.1|

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               415-534, + strand, RNAz p=0.601236

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               415-534, + strand, RNAz p=0.601236

Aligned organism(s): 14 entry(ies)

More info

Aligned organism(s): 14 entry(ies)

Help | Less info


               
               1-109, gnl|bosTau2|chr22 (37916636-37916744)
               

               
               1-109, gnl|canFam2|chr20 (42778269-42777587)
               

               
               1-109, gnl|dasNov1|scaffold_39959 (3398-4038)
               

               
               1-109, gnl|hg17|chr3 (49482580-49483230)
               

               
               1-109, gnl|Hg17|chr3 (49482620-49482728)
               

               
               1-109, gnl|loxAfr1|scaffold_129928 (4999-5656)
               

               
               1-109, gnl|mm7|chr9 (107997203-107996563)
               

               
               1-109, gnl|Mm7|chr9 (107997161-107997053)
               

               
               1-109, gnl|monDom2|scaffold_5 (75670678-75669981)
               

               
               1-109, gnl|panTro1|chr2 (51008681-51009331)
               

               
               1-109, gnl|rheMac2|chr2 (86962051-86961422)
               


               
               147-542, gnl|bosTau2|chr22 (37948608-37949014)
               

               
               147-542, gnl|Hg17|chr3 (49522854-49523259)
               

               
               147-542, gnl|Mm7|chr9 (107948001-107947599)

Aligned organism(s): 14 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-109, gnl|bosTau2|chr22 (37916636-37916744)
               

               
               1-109, gnl|canFam2|chr20 (42778269-42777587)
               

               
               1-109, gnl|dasNov1|scaffold_39959 (3398-4038)
               

               
               1-109, gnl|hg17|chr3 (49482580-49483230)
               

               
               1-109, gnl|Hg17|chr3 (49482620-49482728)
               

               
               1-109, gnl|loxAfr1|scaffold_129928 (4999-5656)
               

               
               1-109, gnl|mm7|chr9 (107997203-107996563)
               

               
               1-109, gnl|Mm7|chr9 (107997161-107997053)
               

               
               1-109, gnl|monDom2|scaffold_5 (75670678-75669981)
               

               
               1-109, gnl|panTro1|chr2 (51008681-51009331)
               

               
               1-109, gnl|rheMac2|chr2 (86962051-86961422)
               


               
               147-542, gnl|bosTau2|chr22 (37948608-37949014)
               

               
               147-542, gnl|Hg17|chr3 (49522854-49523259)
               

               
               147-542, gnl|Mm7|chr9 (107948001-107947599)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

Help | Less info


               
               cty (0.20816)
               

               
               eep (0.122564)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.20816)
               

               
               eep (0.122564)

	1-109, gnl\|bosTau2\|chr22 (37916636-37916744)
	1-109, gnl\|canFam2\|chr20 (42778269-42777587)
	1-109, gnl\|dasNov1\|scaffold_39959 (3398-4038)
	1-109, gnl\|hg17\|chr3 (49482580-49483230)
	1-109, gnl\|Hg17\|chr3 (49482620-49482728)
	1-109, gnl\|loxAfr1\|scaffold_129928 (4999-5656)
	1-109, gnl\|mm7\|chr9 (107997203-107996563)
	1-109, gnl\|Mm7\|chr9 (107997161-107997053)
	1-109, gnl\|monDom2\|scaffold_5 (75670678-75669981)
	1-109, gnl\|panTro1\|chr2 (51008681-51009331)
	1-109, gnl\|rheMac2\|chr2 (86962051-86961422)

	147-542, gnl\|bosTau2\|chr22 (37948608-37949014)
	147-542, gnl\|Hg17\|chr3 (49522854-49523259)
	147-542, gnl\|Mm7\|chr9 (107948001-107947599)