Non-Coding RNA Search

Ss1.1-reep25c_m17.5

Sequence:


               
               CGGTGCTGAGTGAGCCGCCTCGAAAGCCAGCGGGAACCTAGACCCCGAGGAGCCCCCTCG
TCCCCGGCCGGCCTGGCCAGGCCCCGCGCTATGGAGTTCCTCTGGGCCCCTCTCTTGGGT
CTGTGCTGCAGTCTGGCCGCTGCTGACCGCCACACCGTCTTCTGGAACAGTTCAAACCCC
AAGTTTCGGAATGAGGACTACACTGTCCATGTGCGGCTGAATGACTACCTGGACATCATC
TGTCCTCATTACGAGGATGACTCTGTGGCAGAGGCTGCCATGGAGCGGTACACACTATAC
CTGGTGGAGCGTGAGCAGTACCAGCTGTGCCAACCCCAATCCAAGGACCAGGTCCGCTGG
CAGTGCAACCAGCCCAACGCCAGACATGGCCCGGAGAAGCTGTCTGAGAAGTTCCAGCGC
TTCACACCTTTTACCCTGGGCAAGGAGTTCAAAGAGGGACACAGTTACTACTACATCTCC
AAACCCATCCACCACCAGGAAGACCAGTGCTTGAAGCTGAAAGTGACTGTCAGCGGCAAA
ATCACCCACAGTCCTCAGGCCCATGCCAATCCACAGGAGAAAAGACTTCCAGCAGATGAC
CCGGAGGTGCAGGTTCTACATAGCATCGGTCACAGTGCTGCCCCCCGCCTCTCCCCACTT
GCTTGGGCTGTGCTGCTCCTGCCATTCCTGCTGCTCCAGACCTCGTGAAGGCAGAGGCCA
CATCTGGCGTAAAGAGAACTATTACTGAGGCTCCTCCCAGAGCCTCAGTCCCTGGGAAGC
ACTCCCACGACATGCATAAGCTGCCACCCAGAGGAGGTGCCATCCCCACATCCACCTGAG
GGACAGACAGTCCTTTCCCCTCCCTTCCTGCCCATAAGCCAAAGAGACAAGCTCTGTGAA
CATGGCTCACGAAGGGCACTGTGGGAACCGAGCTGGAAGGGGCTTGGGGTCACATGGATG
GACTCCGAGCTTGGCAAAGATGCCCCTCCCAGAGAGAGCCACGACGGCCAGATGAACTGA
CTGAAGGAAAAACAAGACGGAACCCAACATAAGTGTCCGTGAGGATGTGGATTAGATCTC
TGGCCTCGCTCAGGGGGTTAAGGATCCGGCGTGGCTGCAAGCTGTGGTGTAGGTCACAAA
TGCGGCTCGGATCCAGTAGTGCTGTGGCTGAGCCAAGGACAGGAGAAGCAGCATGCTTGG
GCTAACCCAGCATCTCTCCCAGGACTGTCCTCTGTGGCGCTGTCACAGAGAGGTTTGTAG
CCAGGCACTGCATCCTCTCCCATCCTGGGGCAGCATTTCCCAGAGCTGTGCCAGCAGGGG
GGCTGTGCCAACCTGGTCTTAAGGTGTATCTGTAAGGGCAGGGCCCACACACACACAGTC
TGTGCCTAGACTAAAGCCTGAGGGGCAGGGCCCACGTGTACAGAATCTGCATATGAACTT
TCTGTGTCTGTGCTGATTTCTACAACTGGAACTTTTTTATACTGTGTTCTTTGTCTCAAA
ATAAAGTGATGTGTTTGGTTTTTCAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGGTGCTGAGTGAGCCGCCTCGAAAGCCAGCGGGAACCTAGACCCCGAGGAGCCCCCTCG
TCCCCGGCCGGCCTGGCCAGGCCCCGCGCTATGGAGTTCCTCTGGGCCCCTCTCTTGGGT
CTGTGCTGCAGTCTGGCCGCTGCTGACCGCCACACCGTCTTCTGGAACAGTTCAAACCCC
AAGTTTCGGAATGAGGACTACACTGTCCATGTGCGGCTGAATGACTACCTGGACATCATC
TGTCCTCATTACGAGGATGACTCTGTGGCAGAGGCTGCCATGGAGCGGTACACACTATAC
CTGGTGGAGCGTGAGCAGTACCAGCTGTGCCAACCCCAATCCAAGGACCAGGTCCGCTGG
CAGTGCAACCAGCCCAACGCCAGACATGGCCCGGAGAAGCTGTCTGAGAAGTTCCAGCGC
TTCACACCTTTTACCCTGGGCAAGGAGTTCAAAGAGGGACACAGTTACTACTACATCTCC
AAACCCATCCACCACCAGGAAGACCAGTGCTTGAAGCTGAAAGTGACTGTCAGCGGCAAA
ATCACCCACAGTCCTCAGGCCCATGCCAATCCACAGGAGAAAAGACTTCCAGCAGATGAC
CCGGAGGTGCAGGTTCTACATAGCATCGGTCACAGTGCTGCCCCCCGCCTCTCCCCACTT
GCTTGGGCTGTGCTGCTCCTGCCATTCCTGCTGCTCCAGACCTCGTGAAGGCAGAGGCCA
CATCTGGCGTAAAGAGAACTATTACTGAGGCTCCTCCCAGAGCCTCAGTCCCTGGGAAGC
ACTCCCACGACATGCATAAGCTGCCACCCAGAGGAGGTGCCATCCCCACATCCACCTGAG
GGACAGACAGTCCTTTCCCCTCCCTTCCTGCCCATAAGCCAAAGAGACAAGCTCTGTGAA
CATGGCTCACGAAGGGCACTGTGGGAACCGAGCTGGAAGGGGCTTGGGGTCACATGGATG
GACTCCGAGCTTGGCAAAGATGCCCCTCCCAGAGAGAGCCACGACGGCCAGATGAACTGA
CTGAAGGAAAAACAAGACGGAACCCAACATAAGTGTCCGTGAGGATGTGGATTAGATCTC
TGGCCTCGCTCAGGGGGTTAAGGATCCGGCGTGGCTGCAAGCTGTGGTGTAGGTCACAAA
TGCGGCTCGGATCCAGTAGTGCTGTGGCTGAGCCAAGGACAGGAGAAGCAGCATGCTTGG
GCTAACCCAGCATCTCTCCCAGGACTGTCCTCTGTGGCGCTGTCACAGAGAGGTTTGTAG
CCAGGCACTGCATCCTCTCCCATCCTGGGGCAGCATTTCCCAGAGCTGTGCCAGCAGGGG
GGCTGTGCCAACCTGGTCTTAAGGTGTATCTGTAAGGGCAGGGCCCACACACACACAGTC
TGTGCCTAGACTAAAGCCTGAGGGGCAGGGCCCACGTGTACAGAATCTGCATATGAACTT
TCTGTGTCTGTGCTGATTTCTACAACTGGAACTTTTTTATACTGTGTTCTTTGTCTCAAA
ATAAAGTGATGTGTTTGGTTTTTCAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|114797|sp|P20827|EFNA1_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|114797|sp|P20827|EFNA1_HUMAN

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               904-1355, + strand, RNAz p=0.764065
               

               
               906-1008, - strand, RNAz p=0.531054

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               904-1355, + strand, RNAz p=0.764065
               

               
               906-1008, - strand, RNAz p=0.531054

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_182685, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_182685, +

Aligned organism(s): 22 entry(ies)

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Aligned organism(s): 22 entry(ies)

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               178-478, gnl|bosTau2|chr3 (9219349-9219649)
               

               
               178-478, gnl|Hg17|chr1 (151916883-151917183)
               

               
               178-478, gnl|Mm7|chr3 (89402839-89402539)
               


               
               592-735, gnl|bosTau2|chr3 (9221109-9221252)
               

               
               592-735, gnl|Hg17|chr1 (151919500-151919643)
               

               
               592-735, gnl|Mm7|chr3 (89399017-89398874)
               


               
               845-1008, gnl|bosTau2|chr3 (9221465-9221628)
               

               
               845-1008, gnl|canFam2|chr7 (45346751-45346499)
               

               
               845-1008, gnl|dasNov1|scaffold_188839 (1277-1530)
               

               
               845-1008, gnl|hg17|chr1 (151919744-151919983)
               

               
               845-1008, gnl|Hg17|chr1 (151919856-151920009)
               

               
               845-1008, gnl|loxAfr1|scaffold_5844 (88649-88391)
               

               
               845-1008, gnl|mm7|chr3 (89398813-89398562)
               

               
               845-1008, gnl|Mm7|chr3 (89398700-89398526)
               

               
               845-1008, gnl|monDom2|scaffold_59 (2616387-2616186)
               

               
               845-1008, gnl|oryCun1|scaffold_148230 (1482-1227)
               

               
               845-1008, gnl|panTro1|chr1 (133913230-133913469)
               

               
               845-1008, gnl|rheMac2|chr1 (133683067-133683306)
               

               
               845-1008, gnl|rn3|chr2 (181395373-181395122)
               


               
               1170-1355, gnl|bosTau2|chr3 (9221664-9221851)
               

               
               1170-1355, gnl|Hg17|chr1 (151920056-151920226)
               

               
               1170-1355, gnl|Mm7|chr3 (89398488-89398319)

Aligned organism(s): 22 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               178-478, gnl|bosTau2|chr3 (9219349-9219649)
               

               
               178-478, gnl|Hg17|chr1 (151916883-151917183)
               

               
               178-478, gnl|Mm7|chr3 (89402839-89402539)
               


               
               592-735, gnl|bosTau2|chr3 (9221109-9221252)
               

               
               592-735, gnl|Hg17|chr1 (151919500-151919643)
               

               
               592-735, gnl|Mm7|chr3 (89399017-89398874)
               


               
               845-1008, gnl|bosTau2|chr3 (9221465-9221628)
               

               
               845-1008, gnl|canFam2|chr7 (45346751-45346499)
               

               
               845-1008, gnl|dasNov1|scaffold_188839 (1277-1530)
               

               
               845-1008, gnl|hg17|chr1 (151919744-151919983)
               

               
               845-1008, gnl|Hg17|chr1 (151919856-151920009)
               

               
               845-1008, gnl|loxAfr1|scaffold_5844 (88649-88391)
               

               
               845-1008, gnl|mm7|chr3 (89398813-89398562)
               

               
               845-1008, gnl|Mm7|chr3 (89398700-89398526)
               

               
               845-1008, gnl|monDom2|scaffold_59 (2616387-2616186)
               

               
               845-1008, gnl|oryCun1|scaffold_148230 (1482-1227)
               

               
               845-1008, gnl|panTro1|chr1 (133913230-133913469)
               

               
               845-1008, gnl|rheMac2|chr1 (133683067-133683306)
               

               
               845-1008, gnl|rn3|chr2 (181395373-181395122)
               


               
               1170-1355, gnl|bosTau2|chr3 (9221664-9221851)
               

               
               1170-1355, gnl|Hg17|chr1 (151920056-151920226)
               

               
               1170-1355, gnl|Mm7|chr3 (89398488-89398319)

Expressed library(ies): 18 entry(ies)

More info

Expressed library(ies): 18 entry(ies)

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               ute (0.398353)
               

               
               eje (0.395335)
               

               
               eli (0.303628)
               

               
               ssp (0.271039)
               

               
               cty (0.20816)
               

               
               jej (0.197844)
               

               
               nlu (0.191681)
               

               
               nep (0.183925)
               

               
               gul (0.177588)
               

               
               mcp (0.170648)
               

               
               cut (0.169924)
               

               
               cki (0.165235)
               

               
               nco (0.161734)
               

               
               pty (0.142714)
               

               
               nca (0.136874)
               

               
               pla (0.133672)
               

               
               cov (0.132153)
               

               
               eep (0.122564)

Expressed library(ies): 18 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ute (0.398353)
               

               
               eje (0.395335)
               

               
               eli (0.303628)
               

               
               ssp (0.271039)
               

               
               cty (0.20816)
               

               
               jej (0.197844)
               

               
               nlu (0.191681)
               

               
               nep (0.183925)
               

               
               gul (0.177588)
               

               
               mcp (0.170648)
               

               
               cut (0.169924)
               

               
               cki (0.165235)
               

               
               nco (0.161734)
               

               
               pty (0.142714)
               

               
               nca (0.136874)
               

               
               pla (0.133672)
               

               
               cov (0.132153)
               

               
               eep (0.122564)

	904-1355, + strand, RNAz p=0.764065
	906-1008, - strand, RNAz p=0.531054

	178-478, gnl\|bosTau2\|chr3 (9219349-9219649)
	178-478, gnl\|Hg17\|chr1 (151916883-151917183)
	178-478, gnl\|Mm7\|chr3 (89402839-89402539)

	592-735, gnl\|bosTau2\|chr3 (9221109-9221252)
	592-735, gnl\|Hg17\|chr1 (151919500-151919643)
	592-735, gnl\|Mm7\|chr3 (89399017-89398874)

	845-1008, gnl\|bosTau2\|chr3 (9221465-9221628)
	845-1008, gnl\|canFam2\|chr7 (45346751-45346499)
	845-1008, gnl\|dasNov1\|scaffold_188839 (1277-1530)
	845-1008, gnl\|hg17\|chr1 (151919744-151919983)
	845-1008, gnl\|Hg17\|chr1 (151919856-151920009)
	845-1008, gnl\|loxAfr1\|scaffold_5844 (88649-88391)
	845-1008, gnl\|mm7\|chr3 (89398813-89398562)
	845-1008, gnl\|Mm7\|chr3 (89398700-89398526)
	845-1008, gnl\|monDom2\|scaffold_59 (2616387-2616186)
	845-1008, gnl\|oryCun1\|scaffold_148230 (1482-1227)
	845-1008, gnl\|panTro1\|chr1 (133913230-133913469)
	845-1008, gnl\|rheMac2\|chr1 (133683067-133683306)
	845-1008, gnl\|rn3\|chr2 (181395373-181395122)

	1170-1355, gnl\|bosTau2\|chr3 (9221664-9221851)
	1170-1355, gnl\|Hg17\|chr1 (151920056-151920226)
	1170-1355, gnl\|Mm7\|chr3 (89398488-89398319)

	ute (0.398353)
	eje (0.395335)
	eli (0.303628)
	ssp (0.271039)
	cty (0.20816)
	jej (0.197844)
	nlu (0.191681)
	nep (0.183925)
	gul (0.177588)
	mcp (0.170648)
	cut (0.169924)
	cki (0.165235)
	nco (0.161734)
	pty (0.142714)
	nca (0.136874)
	pla (0.133672)
	cov (0.132153)
	eep (0.122564)