Non-Coding RNA Search

Ss1.1-reep25c_o18.5

Sequence:


               
               AAGAGCAGGCCGGTCTTGAACCTACTGAAGTTCAGGGACCTCCCAAGTGCCCATCACCAG
CAGTCTGGGAGCCCTGGCTTTCTCTTCACTCATTGACCCGTCAGCTCCTTGTTCTTGAAC
TGATGCTCTTGAGCTGAGGGAACAGGCGTCTTCTCAGGGTAAAGTTTCAGGAAGTGAGTG
AAAGGCAACTGACAAGTGCAAAGAAGTATTCTACTTTTTACATTGCTGTCAAGGCTACTG
TTCCTCCCTGGGCACAATGGTAGTTTTTATTTTAATGTCTCTATGTTGGTGCAAAGTCCT
GTAGGAAAAATTGCTATGCCTGATGAATAAATTAAGCTGGTCTTTTGATTTAATTGTTTG
GTGAGATTGCCTTTTGGGGATTTCAGTCAGGAATTATGGGGAGTGTGTGTAGTTTTTTTA
ATTTATTAAGTTTTTAAGTGGCATTTTGCAAGCTTATGAGAATATTGGATAAGCTCATGG
AGGAGGCACATCCGCCTCTTACTAGATGATTTTGTGCCCTTTGGGGCACAGTACTGCTCT
CTTAGGAAGTGATGGTGGAGGCTGCTGGGAACGGTTTTTCCACCTGAGTGCAAGTTCCAG
GCTTAATGGAAATGGATGTTCCCTCATGCTAACTACTGAGGCAGAATCAGGAGCTTCTTC
CCTGTGGGTTAACTCATGCAGCAGAACTAGGATTCAGCTCCGTTAGAATGGGAATGTAAA
ATGCCTCTTTCCAAAGTAAGGATTTGTAAAAGGATCATTTTGATACAGATGTATTGCTTG
CCATGCTTATCGTCTAGAAACTTTACATTAGATTATTGGGTGGGTTTTGTCTTTTCACGA
GTTAAAAAAAAAAAAAAATCCCTCGTGATTATAAGAGCTCAGAGCATCTTCTAATTTTTT
TTTTTTTTTTAATGACTACAAGCTTCAGCACAAAGCTGGCATTTCTTTGCCTTTTCTTGT
TAGCAAGAAGTTGACATAGAGGTATTTGAAATCAGCAATGTTATATGAGTCATTCTTGAG
TGTTCTGAATAAACACTACTTAGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGAGCAGGCCGGTCTTGAACCTACTGAAGTTCAGGGACCTCCCAAGTGCCCATCACCAG
CAGTCTGGGAGCCCTGGCTTTCTCTTCACTCATTGACCCGTCAGCTCCTTGTTCTTGAAC
TGATGCTCTTGAGCTGAGGGAACAGGCGTCTTCTCAGGGTAAAGTTTCAGGAAGTGAGTG
AAAGGCAACTGACAAGTGCAAAGAAGTATTCTACTTTTTACATTGCTGTCAAGGCTACTG
TTCCTCCCTGGGCACAATGGTAGTTTTTATTTTAATGTCTCTATGTTGGTGCAAAGTCCT
GTAGGAAAAATTGCTATGCCTGATGAATAAATTAAGCTGGTCTTTTGATTTAATTGTTTG
GTGAGATTGCCTTTTGGGGATTTCAGTCAGGAATTATGGGGAGTGTGTGTAGTTTTTTTA
ATTTATTAAGTTTTTAAGTGGCATTTTGCAAGCTTATGAGAATATTGGATAAGCTCATGG
AGGAGGCACATCCGCCTCTTACTAGATGATTTTGTGCCCTTTGGGGCACAGTACTGCTCT
CTTAGGAAGTGATGGTGGAGGCTGCTGGGAACGGTTTTTCCACCTGAGTGCAAGTTCCAG
GCTTAATGGAAATGGATGTTCCCTCATGCTAACTACTGAGGCAGAATCAGGAGCTTCTTC
CCTGTGGGTTAACTCATGCAGCAGAACTAGGATTCAGCTCCGTTAGAATGGGAATGTAAA
ATGCCTCTTTCCAAAGTAAGGATTTGTAAAAGGATCATTTTGATACAGATGTATTGCTTG
CCATGCTTATCGTCTAGAAACTTTACATTAGATTATTGGGTGGGTTTTGTCTTTTCACGA
GTTAAAAAAAAAAAAAAATCCCTCGTGATTATAAGAGCTCAGAGCATCTTCTAATTTTTT
TTTTTTTTTTAATGACTACAAGCTTCAGCACAAAGCTGGCATTTCTTTGCCTTTTCTTGT
TAGCAAGAAGTTGACATAGAGGTATTTGAAATCAGCAATGTTATATGAGTCATTCTTGAG
TGTTCTGAATAAACACTACTTAGA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               501-606, - strand, RNAz p=0.905055
               

               
               844-963, - strand, RNAz p=0.688765

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               501-606, - strand, RNAz p=0.905055
               

               
               844-963, - strand, RNAz p=0.688765

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               38-1044, gnl|bosTau2|chr3 (18747024-18746018)
               

               
               38-1044, gnl|Hg17|chr1 (158662722-158663710)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               38-1044, gnl|bosTau2|chr3 (18747024-18746018)
               

               
               38-1044, gnl|Hg17|chr1 (158662722-158663710)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               eep (0.122564)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eep (0.122564)

	501-606, - strand, RNAz p=0.905055
	844-963, - strand, RNAz p=0.688765

	38-1044, gnl\|bosTau2\|chr3 (18747024-18746018)
	38-1044, gnl\|Hg17\|chr1 (158662722-158663710)