Non-Coding RNA Search

Ss1.1-reep26c_i4.5

Sequence:


               
               GACCCACATGCAGTTCCTGCACCTGTGACTCTTGTTGCTGCTGCTGATCCACATGCAGTT
CCTGCTCCTGTGACTCTTGCTGCTGCTGCTGCTGATCCACATGCAGTTCCTGCTCCTGTG
ACTCTTGTTGCTGCTGCTGCTGATCCACATGCAGTTCCTGCACCTGTGATTCTTGCTGCT
GCTGCTGCTGTTCCACATGCAGTTCCTGCTGCTGTGGCTCCTGTGGCTGCGGCTCACACT
CTTGCTCAGGCACTCCCTTCACAAGAGTTGTGTGTTTCTCCGCATCCTCCAAGGGGACCT
CCACTGGGAGCTCCGAGAGCATCTTCTGGCATGGAGCAGGCAGCGGAGTTGCCTGTTTCA
CTTGCTCCTGCTGGGTATCGGCGGGAGGAGAAACAGGCTTGAGGGGCTCCTGACTGAGGG
CAGGGGGCAGGGTCACTGGAAGAGTGTATTGCTGGGACATCATGGAAGCTGCTTTAGGTC
AATCAGGCTCACAGTAGGATGATG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GACCCACATGCAGTTCCTGCACCTGTGACTCTTGTTGCTGCTGCTGATCCACATGCAGTT
CCTGCTCCTGTGACTCTTGCTGCTGCTGCTGCTGATCCACATGCAGTTCCTGCTCCTGTG
ACTCTTGTTGCTGCTGCTGCTGATCCACATGCAGTTCCTGCACCTGTGATTCTTGCTGCT
GCTGCTGCTGTTCCACATGCAGTTCCTGCTGCTGTGGCTCCTGTGGCTGCGGCTCACACT
CTTGCTCAGGCACTCCCTTCACAAGAGTTGTGTGTTTCTCCGCATCCTCCAAGGGGACCT
CCACTGGGAGCTCCGAGAGCATCTTCTGGCATGGAGCAGGCAGCGGAGTTGCCTGTTTCA
CTTGCTCCTGCTGGGTATCGGCGGGAGGAGAAACAGGCTTGAGGGGCTCCTGACTGAGGG
CAGGGGGCAGGGTCACTGGAAGAGTGTATTGCTGGGACATCATGGAAGCTGCTTTAGGTC
AATCAGGCTCACAGTAGGATGATG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q8WMM5_PIG

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q8WMM5_PIG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               277-396, - strand, RNAz p=0.863184

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               277-396, - strand, RNAz p=0.863184

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               4-482, gnl|bosTau2|chr3 (14254031-14253577)
               

               
               4-482, gnl|Hg17|chr1 (149695887-149695329)
               

               
               4-482, gnl|Mm7|chr3 (92678352-92678815)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-482, gnl|bosTau2|chr3 (14254031-14253577)
               

               
               4-482, gnl|Hg17|chr1 (149695887-149695329)
               

               
               4-482, gnl|Mm7|chr3 (92678352-92678815)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               eep (0.367692)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eep (0.367692)

	4-482, gnl\|bosTau2\|chr3 (14254031-14253577)
	4-482, gnl\|Hg17\|chr1 (149695887-149695329)
	4-482, gnl\|Mm7\|chr3 (92678352-92678815)