Ss1.1-reep26c_o15.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGGGTTGAAGACATAGAGCGAACTCATCCCCGTCTCCTTGTCCTTGACCAGAAGAGTGCA CTGAGGAGGGTGGGGGAAATGGGCAGTTGTCCTCTGGACCATCAGCTTAAAGGAGGAGTC GGGCTTGACGTTAGGGAGATACTGTTTCCACAGGATGGTGCCAGAGCTGCTCTCGATGCC AAAAAGCTTGCCTGAGGCCGTCACCATCACCATCATCTTCTGGAGGTTGAACTCGTCTCT GGCCAAGGTGTCAATGTTGATCTCATTCTTAATCTGACTCCGGGGCTTCCGAGCATCGTA GAACATTTTCCAGAGGTGGGAAGTCCACGCCTGCAGCAGGATGAGCTGGGCCGAGAGGCG TTTCAGGAACATGCCCAGCAAGCCGTCTTGAATTGCTGCCTTCTTGCCAAATTCCCCTTC CAGCTCAGCCTGCGCCCCGGTCAGGGGGAGGTCCACCATCTCCAGGCACACTACCTCGGC CAAGGACTCCTCGCGGCTCCAAAGCACCACCCTCCCTGCCAGCTGCTGCAGGAAAAGCAG CAGGTGGTCCTCCGTCTGCACCAAGGCCCGGTAGCCCACGGAGTCATCCTTCTTCAAGAA GACCTGGATGTACAGCCGCTCCGGCCGGGTGCCGTTCTGTTCCAGGCTGAAGGTGATCGT GGTGTCGAGCAGCCGCCGACCCGTCTCCACCAAGTAGAGGTTGATGGTGTAGGTCTGGTT GAAACAAGCCAGCGAATCCTGTGCACTGGACTTCTCTGAGAAGCTCCCCATTGACCCATC TTCAGAACTGCTAGGCTTCTGCACCTCATTCCGGCAGGTCATGACTGCGGCCACCGTCTT CTCCCCAGTGGTGGCGAAGCTCACTAGGGCAGTCTGCGGGAAGTTTTTGAGCAGACTCAG GACCCCGTGGTGGTGGTGCAGCAGAGCATAGTGGCTCGGGGACAACTGTAGGAAGAACTG GGCTCGAGAAGGATCCATGGGGTTGGGCTGTGTCGGCAGGACCCGGGGCTGGAATCCACT TGCAAATTCTAGGTCAAGAGACTGCAGGGGGATCTGCCTCAACTCCCACTCTGTCTCCAG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGGGTTGAAGACATAGAGCGAACTCATCCCCGTCTCCTTGTCCTTGACCAGAAGAGTGCA CTGAGGAGGGTGGGGGAAATGGGCAGTTGTCCTCTGGACCATCAGCTTAAAGGAGGAGTC GGGCTTGACGTTAGGGAGATACTGTTTCCACAGGATGGTGCCAGAGCTGCTCTCGATGCC AAAAAGCTTGCCTGAGGCCGTCACCATCACCATCATCTTCTGGAGGTTGAACTCGTCTCT GGCCAAGGTGTCAATGTTGATCTCATTCTTAATCTGACTCCGGGGCTTCCGAGCATCGTA GAACATTTTCCAGAGGTGGGAAGTCCACGCCTGCAGCAGGATGAGCTGGGCCGAGAGGCG TTTCAGGAACATGCCCAGCAAGCCGTCTTGAATTGCTGCCTTCTTGCCAAATTCCCCTTC CAGCTCAGCCTGCGCCCCGGTCAGGGGGAGGTCCACCATCTCCAGGCACACTACCTCGGC CAAGGACTCCTCGCGGCTCCAAAGCACCACCCTCCCTGCCAGCTGCTGCAGGAAAAGCAG CAGGTGGTCCTCCGTCTGCACCAAGGCCCGGTAGCCCACGGAGTCATCCTTCTTCAAGAA GACCTGGATGTACAGCCGCTCCGGCCGGGTGCCGTTCTGTTCCAGGCTGAAGGTGATCGT GGTGTCGAGCAGCCGCCGACCCGTCTCCACCAAGTAGAGGTTGATGGTGTAGGTCTGGTT GAAACAAGCCAGCGAATCCTGTGCACTGGACTTCTCTGAGAAGCTCCCCATTGACCCATC TTCAGAACTGCTAGGCTTCTGCACCTCATTCCGGCAGGTCATGACTGCGGCCACCGTCTT CTCCCCAGTGGTGGCGAAGCTCACTAGGGCAGTCTGCGGGAAGTTTTTGAGCAGACTCAG GACCCCGTGGTGGTGGTGCAGCAGAGCATAGTGGCTCGGGGACAACTGTAGGAAGAACTG GGCTCGAGAAGGATCCATGGGGTTGGGCTGTGTCGGCAGGACCCGGGGCTGGAATCCACT TGCAAATTCTAGGTCAAGAGACTGCAGGGGGATCTGCCTCAACTCCCACTCTGTCTCCAG |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 58 entry(ies) | More info |
| Aligned organism(s): 58 entry(ies) | Help | Less info |
| 187-388, gnl|bosTau2|chr2 (61156667-61156868) | |
| 187-388, gnl|canFam2|chr2 (82274268-82274136) | |
| 187-388, gnl|danRer3|chr23 (23378880-23379012) | |
| 187-388, gnl|dasNov1|scaffold_46896 (2297-2429) | |
| 187-388, gnl|echTel1|scaffold_312688 (22683-22552) | |
| 187-388, gnl|fr1|chrUn (192740782-192740914) | |
| 187-388, gnl|galGal2|chr21 (4487020-4487152) | |
| 187-388, gnl|hg17|chr1 (19304731-19304863) | |
| 187-388, gnl|Hg17|chr1 (19304736-19304937) | |
| 187-388, gnl|loxAfr1|scaffold_95271 (8613-8745) | |
| 187-388, gnl|mm7|chr4 (138743842-138743710) | |
| 187-388, gnl|Mm7|chr4 (138743835-138743634) | |
| 187-388, gnl|monDom2|scaffold_90 (326473-326605) | |
| 187-388, gnl|oryCun1|scaffold_173449 (60812-60944) | |
| 187-388, gnl|panTro1|chr1 (19595699-19595831) | |
| 187-388, gnl|rheMac2|chr1 (21890578-21890710) | |
| 187-388, gnl|rn3|chr5 (158175869-158175737) | |
| 187-388, gnl|tetNig1|chr9 (1250855-1250723) | |
| 187-388, gnl|xenTro1|scaffold_1498 (61791-61659) | |
| 396-519, gnl|bosTau2|chr2 (61158757-61158880) | |
| 396-519, gnl|canFam2|chr2 (82272463-82272293) | |
| 396-519, gnl|danRer3|chr23 (23379648-23379802) | |
| 396-519, gnl|dasNov1|scaffold_46896 (4094-4256) | |
| 396-519, gnl|echTel1|scaffold_312688 (20898-20718) | |
| 396-519, gnl|fr1|chrUn (192741532-192741646) | |
| 396-519, gnl|galGal2|chr21 (4488145-4488308) | |
| 396-519, gnl|hg17|chr1 (19306907-19307085) | |
| 396-519, gnl|Hg17|chr1 (19306930-19307053) | |
| 396-519, gnl|loxAfr1|scaffold_12587 (18548-18714) | |
| 396-519, gnl|mm7|chr4 (138742234-138742067) | |
| 396-519, gnl|Mm7|chr4 (138742220-138742097) | |
| 396-519, gnl|monDom2|scaffold_90 (327889-328027) | |
| 396-519, gnl|oryCun1|scaffold_173449 (62540-62705) | |
| 396-519, gnl|panTro1|chr1 (19597873-19598051) | |
| 396-519, gnl|rheMac2|chr1 (21892776-21892954) | |
| 396-519, gnl|rn3|chr5 (158174244-158174099) | |
| 396-519, gnl|tetNig1|chr9 (1250266-1250156) | |
| 396-519, gnl|xenTro1|scaffold_1498 (60433-60286) | |
| 613-740, gnl|bosTau2|chr2 (61160134-61160261) | |
| 613-740, gnl|canFam2|chr2 (82271130-82270985) | |
| 613-740, gnl|dasNov1|scaffold_46896 (5421-5567) | |
| 613-740, gnl|echTel1|scaffold_161358 (604-459) | |
| 613-740, gnl|galGal2|chr21 (4489079-4489224) | |
| 613-740, gnl|hg17|chr1 (19309813-19309958) | |
| 613-740, gnl|Hg17|chr1 (19309814-19309941) | |
| 613-740, gnl|loxAfr1|scaffold_12587 (19861-20006) | |
| 613-740, gnl|mm7|chr4 (138740665-138740522) | |
| 613-740, gnl|Mm7|chr4 (138740662-138740535) | |
| 613-740, gnl|monDom2|scaffold_90 (329270-329415) | |
| 613-740, gnl|oryCun1|scaffold_173449 (63729-63874) | |
| 613-740, gnl|panTro1|chr1 (19600824-19600969) | |
| 613-740, gnl|rheMac2|chr1 (21895689-21895834) | |
| 613-740, gnl|rn3|chr5 (158172865-158172720) | |
| 613-740, gnl|tetNig1|chr9 (1249790-1249656) | |
| 613-740, gnl|xenTro1|scaffold_1498 (60038-59905) | |
| 874-1044, gnl|bosTau2|chr2 (61162286-61162456) | |
| 874-1044, gnl|Hg17|chr1 (19311618-19311788) | |
| 874-1044, gnl|Mm7|chr4 (138739065-138738893) |
| Aligned organism(s): 58 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 187-388, gnl|bosTau2|chr2 (61156667-61156868) | |
| 187-388, gnl|canFam2|chr2 (82274268-82274136) | |
| 187-388, gnl|danRer3|chr23 (23378880-23379012) | |
| 187-388, gnl|dasNov1|scaffold_46896 (2297-2429) | |
| 187-388, gnl|echTel1|scaffold_312688 (22683-22552) | |
| 187-388, gnl|fr1|chrUn (192740782-192740914) | |
| 187-388, gnl|galGal2|chr21 (4487020-4487152) | |
| 187-388, gnl|hg17|chr1 (19304731-19304863) | |
| 187-388, gnl|Hg17|chr1 (19304736-19304937) | |
| 187-388, gnl|loxAfr1|scaffold_95271 (8613-8745) | |
| 187-388, gnl|mm7|chr4 (138743842-138743710) | |
| 187-388, gnl|Mm7|chr4 (138743835-138743634) | |
| 187-388, gnl|monDom2|scaffold_90 (326473-326605) | |
| 187-388, gnl|oryCun1|scaffold_173449 (60812-60944) | |
| 187-388, gnl|panTro1|chr1 (19595699-19595831) | |
| 187-388, gnl|rheMac2|chr1 (21890578-21890710) | |
| 187-388, gnl|rn3|chr5 (158175869-158175737) | |
| 187-388, gnl|tetNig1|chr9 (1250855-1250723) | |
| 187-388, gnl|xenTro1|scaffold_1498 (61791-61659) | |
| 396-519, gnl|bosTau2|chr2 (61158757-61158880) | |
| 396-519, gnl|canFam2|chr2 (82272463-82272293) | |
| 396-519, gnl|danRer3|chr23 (23379648-23379802) | |
| 396-519, gnl|dasNov1|scaffold_46896 (4094-4256) | |
| 396-519, gnl|echTel1|scaffold_312688 (20898-20718) | |
| 396-519, gnl|fr1|chrUn (192741532-192741646) | |
| 396-519, gnl|galGal2|chr21 (4488145-4488308) | |
| 396-519, gnl|hg17|chr1 (19306907-19307085) | |
| 396-519, gnl|Hg17|chr1 (19306930-19307053) | |
| 396-519, gnl|loxAfr1|scaffold_12587 (18548-18714) | |
| 396-519, gnl|mm7|chr4 (138742234-138742067) | |
| 396-519, gnl|Mm7|chr4 (138742220-138742097) | |
| 396-519, gnl|monDom2|scaffold_90 (327889-328027) | |
| 396-519, gnl|oryCun1|scaffold_173449 (62540-62705) | |
| 396-519, gnl|panTro1|chr1 (19597873-19598051) | |
| 396-519, gnl|rheMac2|chr1 (21892776-21892954) | |
| 396-519, gnl|rn3|chr5 (158174244-158174099) | |
| 396-519, gnl|tetNig1|chr9 (1250266-1250156) | |
| 396-519, gnl|xenTro1|scaffold_1498 (60433-60286) | |
| 613-740, gnl|bosTau2|chr2 (61160134-61160261) | |
| 613-740, gnl|canFam2|chr2 (82271130-82270985) | |
| 613-740, gnl|dasNov1|scaffold_46896 (5421-5567) | |
| 613-740, gnl|echTel1|scaffold_161358 (604-459) | |
| 613-740, gnl|galGal2|chr21 (4489079-4489224) | |
| 613-740, gnl|hg17|chr1 (19309813-19309958) | |
| 613-740, gnl|Hg17|chr1 (19309814-19309941) | |
| 613-740, gnl|loxAfr1|scaffold_12587 (19861-20006) | |
| 613-740, gnl|mm7|chr4 (138740665-138740522) | |
| 613-740, gnl|Mm7|chr4 (138740662-138740535) | |
| 613-740, gnl|monDom2|scaffold_90 (329270-329415) | |
| 613-740, gnl|oryCun1|scaffold_173449 (63729-63874) | |
| 613-740, gnl|panTro1|chr1 (19600824-19600969) | |
| 613-740, gnl|rheMac2|chr1 (21895689-21895834) | |
| 613-740, gnl|rn3|chr5 (158172865-158172720) | |
| 613-740, gnl|tetNig1|chr9 (1249790-1249656) | |
| 613-740, gnl|xenTro1|scaffold_1498 (60038-59905) | |
| 874-1044, gnl|bosTau2|chr2 (61162286-61162456) | |
| 874-1044, gnl|Hg17|chr1 (19311618-19311788) | |
| 874-1044, gnl|Mm7|chr4 (138739065-138738893) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| eep (0.245128) |