Non-Coding RNA Search

Ss1.1-reep27c_l1.5

Sequence:


               
               TGCAGGAAAAAATATGCATTAACTAACATCCAGGCGGCAATGGGCCTCTCGGATCCGGCT
GCACAGCCCCTGCTGGGAAATGGCTCTGCCAACATCAAGCTGGTGAAGAATGGGGAGAAC
CAGCTCCGGAAGGCTGCCGAGCAAGGGCAGCAGGACCCCAACAAAAACGTCAGCCCCACT
GCAGTCATCAACATAACTTCTGAGAAGTTGGAGGGTAAGGAGCCCCACGCACAGGAGTCC
TCAGGCTGTGAGATTTTACCCTCCCAGCCCCGGAGAACCAAGAGCTTCCTGAATTACTAT
GCAGACCTGGAAACCTCAGCCAGGGACCTCGAGCAGACCTCGGGCAACCAGCACGGGGCC
GTGGAAGAGAATTCCCAGCCAGGCCAGGGCCAGGCCTCCACCGTCCTTGGGAATGGCGCT
TTGCTGCTGCAGAAACCAAACAAGCCCCAGTTCAGCCCCGAGGATGGCCACCTAGCCACG
GTGTCCTCCAGCCCGGAGACCAAGAAGGATCACCCGAAGACGGGGGCCAAAACCGATTGC
GCGCTGCACCGGATCCAGAACCTGGCGCCGAGTGACGAGGAGTCCAGCTGGACGACACTA
TCCCAAGACAGCGCCTCCCCCAGCTCCCCGGATGAGACAGCAGATGTATGGAGCGATCAC
TCCTTTCAGACCGATCCAGATTTGCCGCCGGGCTGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGCAGGAAAAAATATGCATTAACTAACATCCAGGCGGCAATGGGCCTCTCGGATCCGGCT
GCACAGCCCCTGCTGGGAAATGGCTCTGCCAACATCAAGCTGGTGAAGAATGGGGAGAAC
CAGCTCCGGAAGGCTGCCGAGCAAGGGCAGCAGGACCCCAACAAAAACGTCAGCCCCACT
GCAGTCATCAACATAACTTCTGAGAAGTTGGAGGGTAAGGAGCCCCACGCACAGGAGTCC
TCAGGCTGTGAGATTTTACCCTCCCAGCCCCGGAGAACCAAGAGCTTCCTGAATTACTAT
GCAGACCTGGAAACCTCAGCCAGGGACCTCGAGCAGACCTCGGGCAACCAGCACGGGGCC
GTGGAAGAGAATTCCCAGCCAGGCCAGGGCCAGGCCTCCACCGTCCTTGGGAATGGCGCT
TTGCTGCTGCAGAAACCAAACAAGCCCCAGTTCAGCCCCGAGGATGGCCACCTAGCCACG
GTGTCCTCCAGCCCGGAGACCAAGAAGGATCACCCGAAGACGGGGGCCAAAACCGATTGC
GCGCTGCACCGGATCCAGAACCTGGCGCCGAGTGACGAGGAGTCCAGCTGGACGACACTA
TCCCAAGACAGCGCCTCCCCCAGCTCCCCGGATGAGACAGCAGATGTATGGAGCGATCAC
TCCTTTCAGACCGATCCAGATTTGCCGCCGGGCTGG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55726908|emb|CAH90213.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55726908|emb|CAH90213.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               41-160, - strand, RNAz p=0.74732
               

               
               201-320, - strand, RNAz p=0.562959

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               41-160, - strand, RNAz p=0.74732
               

               
               201-320, - strand, RNAz p=0.562959

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-640, gnl|bosTau2|chr3 (52446574-52445941)
               

               
               1-640, gnl|Hg17|chr4 (40857167-40856528)
               

               
               1-640, gnl|Mm7|chr5 (65807636-65806997)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-640, gnl|bosTau2|chr3 (52446574-52445941)
               

               
               1-640, gnl|Hg17|chr4 (40857167-40856528)
               

               
               1-640, gnl|Mm7|chr5 (65807636-65806997)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               eep (0.122564)
               

               
               ebs (0.118301)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eep (0.122564)
               

               
               ebs (0.118301)

	41-160, - strand, RNAz p=0.74732
	201-320, - strand, RNAz p=0.562959

	1-640, gnl\|bosTau2\|chr3 (52446574-52445941)
	1-640, gnl\|Hg17\|chr4 (40857167-40856528)
	1-640, gnl\|Mm7\|chr5 (65807636-65806997)