Ss1.1-reep27c_l13.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TCATATCGCGCGTGGCGCAGGCGCACAGCAAGAAAGAGGCGGCAGTACGGTGAAGCCAGA GTGGCCGGCTGAGTAGGGAGGCTGACTCCGCCTGAGACTTCAGTTGTCCCGGCGGGGATG GCGCCCCCCGCGGCCTAGTGGTCCCGTGCCCGGGCGAGCCCCAGCCGGGCCTCCTCCCTC GCTGTACGCCGGGGTCCCGGCTGCCGAGAGCATGATGGTGCCGCTGGCCAAGCTGGCCAG CCCAGCATATCAGTGCTTTCATGCCTTAAAAATTAAGAAAAATTATCTACCTCTGTGTGC TACAAGATGGTCCTCAACTTCCAAAGTGCCTCGAATTACTACCCACTACACTATTTATCC CCGGGATCAGGACAAGCGATGGGAAGGAGTGAACATGGAGAGGTTCGCAGAGGAGGCTGA TGTAGTGATAGTGGGTGCCGGCCCCGCAGGGCTCTCCGCAGCCACCCGGCTGAAGCAGCT GGCGGCCCAGCATGAGAAGGACCTCCGTGTGTGTCTGGTGGAGAAGGCTGCTCAGATAGG GGCTCACACGCTCTCCGGAGCTTGCCTGGATCCACGCGCTTTCGAAGAGCTTTTCCCAGA CTGGAAGGAGAAGGGAGCACCACTTAACACTCCTGTCACAGAAGATAGATTTGGGATTTT AACAGAGAAATACAGAATTCCTGTGCCAATTCTTCCAGGTCTTCCGATGAACAACCACGG CAACTATGTGGTCCGCCTGGGACACCTGGTGAGCTGGATGGGGGAGCAGGCAGAAGCCCT CGGTGTGGAAGTGTACCCCGGCTACGCTGCTGCAGAGATCCTTTTTCATGAAGATGGTAG TGTGAAAGGCATCGCTACAAACGACGTAGGGATACAGAAGGATGGGGC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TCATATCGCGCGTGGCGCAGGCGCACAGCAAGAAAGAGGCGGCAGTACGGTGAAGCCAGA GTGGCCGGCTGAGTAGGGAGGCTGACTCCGCCTGAGACTTCAGTTGTCCCGGCGGGGATG GCGCCCCCCGCGGCCTAGTGGTCCCGTGCCCGGGCGAGCCCCAGCCGGGCCTCCTCCCTC GCTGTACGCCGGGGTCCCGGCTGCCGAGAGCATGATGGTGCCGCTGGCCAAGCTGGCCAG CCCAGCATATCAGTGCTTTCATGCCTTAAAAATTAAGAAAAATTATCTACCTCTGTGTGC TACAAGATGGTCCTCAACTTCCAAAGTGCCTCGAATTACTACCCACTACACTATTTATCC CCGGGATCAGGACAAGCGATGGGAAGGAGTGAACATGGAGAGGTTCGCAGAGGAGGCTGA TGTAGTGATAGTGGGTGCCGGCCCCGCAGGGCTCTCCGCAGCCACCCGGCTGAAGCAGCT GGCGGCCCAGCATGAGAAGGACCTCCGTGTGTGTCTGGTGGAGAAGGCTGCTCAGATAGG GGCTCACACGCTCTCCGGAGCTTGCCTGGATCCACGCGCTTTCGAAGAGCTTTTCCCAGA CTGGAAGGAGAAGGGAGCACCACTTAACACTCCTGTCACAGAAGATAGATTTGGGATTTT AACAGAGAAATACAGAATTCCTGTGCCAATTCTTCCAGGTCTTCCGATGAACAACCACGG CAACTATGTGGTCCGCCTGGGACACCTGGTGAGCTGGATGGGGGAGCAGGCAGAAGCCCT CGGTGTGGAAGTGTACCCCGGCTACGCTGCTGCAGAGATCCTTTTTCATGAAGATGGTAG TGTGAAAGGCATCGCTACAAACGACGTAGGGATACAGAAGGATGGGGC |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 35 entry(ies) | More info |
| Aligned organism(s): 35 entry(ies) | Help | Less info |
| 6-243, gnl|bosTau2|chr17 (21841707-21841482) | |
| 6-243, gnl|canFam2|chr15 (58771961-58772377) | |
| 6-243, gnl|dasNov1|scaffold_8465 (4624-5036) | |
| 6-243, gnl|echTel1|scaffold_27644 (933-511) | |
| 6-243, gnl|hg17|chr4 (159950940-159951358) | |
| 6-243, gnl|Hg17|chr4 (159951009-159951245) | |
| 6-243, gnl|loxAfr1|scaffold_264 (80673-80263) | |
| 6-243, gnl|mm7|chr3 (79733870-79733437) | |
| 6-243, gnl|Mm7|chr3 (79733798-79733554) | |
| 6-243, gnl|monDom2|scaffold_9 (30976776-30977145) | |
| 6-243, gnl|oryCun1|scaffold_147911 (537-108) | |
| 6-243, gnl|panTro1|chr3 (177380289-177380707) | |
| 6-243, gnl|rheMac2|chr5 (150843754-150844169) | |
| 6-243, gnl|rn3|chr2 (170980907-170980477) | |
| 385-617, gnl|bosTau2|chr17 (21864029-21864261) | |
| 385-617, gnl|Hg17|chr4 (159960950-159961182) | |
| 385-617, gnl|Mm7|chr3 (79728003-79727771) | |
| 697-817, gnl|bosTau2|chr17 (21866332-21866452) | |
| 697-817, gnl|canFam2|chr15 (58782967-58783120) | |
| 697-817, gnl|danRer3|chrUn (125362750-125362605) | |
| 697-817, gnl|dasNov1|scaffold_8465 (14679-14838) | |
| 697-817, gnl|echTel1|scaffold_285812 (4045-4201) | |
| 697-817, gnl|galGal2|chr4 (22508638-22508769) | |
| 697-817, gnl|hg17|chr4 (159963846-159964001) | |
| 697-817, gnl|Hg17|chr4 (159963856-159963976) | |
| 697-817, gnl|loxAfr1|scaffold_264 (69644-69492) | |
| 697-817, gnl|mm7|chr3 (79723473-79723318) | |
| 697-817, gnl|Mm7|chr3 (79723461-79723341) | |
| 697-817, gnl|monDom2|scaffold_9 (30987011-30987165) | |
| 697-817, gnl|oryCun1|scaffold_149948 (21554-21399) | |
| 697-817, gnl|panTro1|chr3 (177393301-177393456) | |
| 697-817, gnl|rheMac2|chr5 (150857182-150857338) | |
| 697-817, gnl|rn3|chr2 (170973023-170972874) | |
| 697-817, gnl|tetNig1|chr20 (1545489-1545621) | |
| 697-817, gnl|xenTro1|scaffold_231 (906562-906419) |
| Aligned organism(s): 35 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 6-243, gnl|bosTau2|chr17 (21841707-21841482) | |
| 6-243, gnl|canFam2|chr15 (58771961-58772377) | |
| 6-243, gnl|dasNov1|scaffold_8465 (4624-5036) | |
| 6-243, gnl|echTel1|scaffold_27644 (933-511) | |
| 6-243, gnl|hg17|chr4 (159950940-159951358) | |
| 6-243, gnl|Hg17|chr4 (159951009-159951245) | |
| 6-243, gnl|loxAfr1|scaffold_264 (80673-80263) | |
| 6-243, gnl|mm7|chr3 (79733870-79733437) | |
| 6-243, gnl|Mm7|chr3 (79733798-79733554) | |
| 6-243, gnl|monDom2|scaffold_9 (30976776-30977145) | |
| 6-243, gnl|oryCun1|scaffold_147911 (537-108) | |
| 6-243, gnl|panTro1|chr3 (177380289-177380707) | |
| 6-243, gnl|rheMac2|chr5 (150843754-150844169) | |
| 6-243, gnl|rn3|chr2 (170980907-170980477) | |
| 385-617, gnl|bosTau2|chr17 (21864029-21864261) | |
| 385-617, gnl|Hg17|chr4 (159960950-159961182) | |
| 385-617, gnl|Mm7|chr3 (79728003-79727771) | |
| 697-817, gnl|bosTau2|chr17 (21866332-21866452) | |
| 697-817, gnl|canFam2|chr15 (58782967-58783120) | |
| 697-817, gnl|danRer3|chrUn (125362750-125362605) | |
| 697-817, gnl|dasNov1|scaffold_8465 (14679-14838) | |
| 697-817, gnl|echTel1|scaffold_285812 (4045-4201) | |
| 697-817, gnl|galGal2|chr4 (22508638-22508769) | |
| 697-817, gnl|hg17|chr4 (159963846-159964001) | |
| 697-817, gnl|Hg17|chr4 (159963856-159963976) | |
| 697-817, gnl|loxAfr1|scaffold_264 (69644-69492) | |
| 697-817, gnl|mm7|chr3 (79723473-79723318) | |
| 697-817, gnl|Mm7|chr3 (79723461-79723341) | |
| 697-817, gnl|monDom2|scaffold_9 (30987011-30987165) | |
| 697-817, gnl|oryCun1|scaffold_149948 (21554-21399) | |
| 697-817, gnl|panTro1|chr3 (177393301-177393456) | |
| 697-817, gnl|rheMac2|chr5 (150857182-150857338) | |
| 697-817, gnl|rn3|chr2 (170973023-170972874) | |
| 697-817, gnl|tetNig1|chr20 (1545489-1545621) | |
| 697-817, gnl|xenTro1|scaffold_231 (906562-906419) |
| Expressed library(ies): 9 entry(ies) | More info |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
| mas (0.42061) | |
| eep (0.245128) | |
| eru (0.240096) | |
| nms (0.213858) | |
| ill (0.175593) | |
| nje (0.16592) | |
| nco (0.161734) | |
| ste (0.135208) | |
| nmm (0.132802) |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| mas (0.42061) | |
| eep (0.245128) | |
| eru (0.240096) | |
| nms (0.213858) | |
| ill (0.175593) | |
| nje (0.16592) | |
| nco (0.161734) | |
| ste (0.135208) | |
| nmm (0.132802) |