Non-Coding RNA Search

Ss1.1-reep27c_m24.5

Sequence:


               
               CAGCGCCACCTCCCCAGTCCCGGATTCGGACTCTTGCTGCAAGGAGCCACTGGCCGAGCC
CCCATCCATGCGGCACAGCCTGCCCAGCACCCTTGCCAGCAGCCCCCGTGGCTCCGAGGA
ATACTACTCCTTCCACGAGTCGGACCTGGACCTACCTGAGATAGGCAGTGGCTCCATGTC
CAGCCGCGAGATCGATGTGCTCATCTTCAAGAAGCTGACGGAGCTGTTCAGTGTACACCA
GATCGACGAGCTGGCCAAGTGCACCTCAGACACTGTGTTCCTGGAGAAGACCAGTAAGAT
CTCGGACCTTATCAGCAGCATCACCCAGGACTACCATCTGGATGAGCAGGATGCTGAGGG
CCGCCTGGTTCGCGGCATCATTCGCATCAGTACCCGAAAGAGCCGTGCCCGCCCCCAGGC
CACAGAGGGGCGCTCAACCCGGGCGGCTGCCCCTGCTGCCGCTGCCCCTGACAGTGGCCA
TGAGACCATGGTGGGCTCAGGGCTCAGCCAGGATGAACTCACGGTGCAGATCTCCCAGGA
GACGACCGCAGATGCCATCGCCAGGAAGCTGAGGCCTTATGGAGCCCCAGGATACCCCAC
CAGCCACGACTCGTCCTTCCAGGGCACTGACACAGACTCTTCAGGGGCACCCCTGCTCCA
GGTGTACTGCTAACATTCGCCAGGCCCAGTGGCCACAACCCCTTCTGAGAGAAGCACAGA
CTACAGCATGAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGCGCCACCTCCCCAGTCCCGGATTCGGACTCTTGCTGCAAGGAGCCACTGGCCGAGCC
CCCATCCATGCGGCACAGCCTGCCCAGCACCCTTGCCAGCAGCCCCCGTGGCTCCGAGGA
ATACTACTCCTTCCACGAGTCGGACCTGGACCTACCTGAGATAGGCAGTGGCTCCATGTC
CAGCCGCGAGATCGATGTGCTCATCTTCAAGAAGCTGACGGAGCTGTTCAGTGTACACCA
GATCGACGAGCTGGCCAAGTGCACCTCAGACACTGTGTTCCTGGAGAAGACCAGTAAGAT
CTCGGACCTTATCAGCAGCATCACCCAGGACTACCATCTGGATGAGCAGGATGCTGAGGG
CCGCCTGGTTCGCGGCATCATTCGCATCAGTACCCGAAAGAGCCGTGCCCGCCCCCAGGC
CACAGAGGGGCGCTCAACCCGGGCGGCTGCCCCTGCTGCCGCTGCCCCTGACAGTGGCCA
TGAGACCATGGTGGGCTCAGGGCTCAGCCAGGATGAACTCACGGTGCAGATCTCCCAGGA
GACGACCGCAGATGCCATCGCCAGGAAGCTGAGGCCTTATGGAGCCCCAGGATACCCCAC
CAGCCACGACTCGTCCTTCCAGGGCACTGACACAGACTCTTCAGGGGCACCCCTGCTCCA
GGTGTACTGCTAACATTCGCCAGGCCCAGTGGCCACAACCCCTTCTGAGAGAAGCACAGA
CTACAGCATGAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|21619959|gb|AAH33143.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|21619959|gb|AAH33143.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-568, gnl|bosTau2|chr2 (79388316-79388885)
               

               
               1-568, gnl|Hg17|chr1 (26962489-26961917)
               

               
               1-568, gnl|Mm7|chr4 (132906931-132907482)
               


               
               585-732, gnl|bosTau2|chr2 (79390551-79390697)
               

               
               585-732, gnl|Hg17|chr1 (26960795-26960644)
               

               
               585-732, gnl|Mm7|chr4 (132908714-132908856)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-568, gnl|bosTau2|chr2 (79388316-79388885)
               

               
               1-568, gnl|Hg17|chr1 (26962489-26961917)
               

               
               1-568, gnl|Mm7|chr4 (132906931-132907482)
               


               
               585-732, gnl|bosTau2|chr2 (79390551-79390697)
               

               
               585-732, gnl|Hg17|chr1 (26960795-26960644)
               

               
               585-732, gnl|Mm7|chr4 (132908714-132908856)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               eep (0.122564)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eep (0.122564)

	1-568, gnl\|bosTau2\|chr2 (79388316-79388885)
	1-568, gnl\|Hg17\|chr1 (26962489-26961917)
	1-568, gnl\|Mm7\|chr4 (132906931-132907482)

	585-732, gnl\|bosTau2\|chr2 (79390551-79390697)
	585-732, gnl\|Hg17\|chr1 (26960795-26960644)
	585-732, gnl\|Mm7\|chr4 (132908714-132908856)