Non-Coding RNA Search

Ss1.1-reep28c_l22.5

Sequence:


               
               CACCTATAGCCCTGACCGTGGCAGGAGTTCCAAATCAAACAACTGTACAGAAAAGCCAGG
TGCCTGCTGCCCAGGCTGGTGCAGAAACCAAACCAGCAACAGCAGCAGTCCCGTCTTCTC
AGCTTGTCAAACACGAAACCACATTGGCAAACCCTGACTCATTTGGCATTCGGGCAAAAA
AAGACTAAAGAGCAACTGGCAGAATTAAAAGTCAGCTACCTGAAGAATCAGTTTCCCCAC
GATTCCGAAATTATCAGACTTATGAAAATCACAGGCCTGACTAAAGGAGAGATTAAAAAA
TGGTTCAGCGACACAAGGTACAACCAGAGAAATTCAAAGAGTAATCAGTGCTTACATCTC
AACAATGATTCCTCGGCCACTATTATTATAGACTCCAGTGATGAAACCACGGAATCCCCA
ACTGTTGCGTCACAGCAGAAACAATCCTGGAATCCTTTTCCCGACTTCACTCCCCAAAAG
TTTAAAGAGAAGACGGCAGAGCAGCTCCGTGCCCTTCAGGCGAGTTTTCTCAACAGCTCT
GTGCTTACCGATGAGGAATTAAATAGGTTAAGAGCGCAAACCAAACTCACCAGAAGGGAA
ATTGATGCTTGGTTTACAGAGAAGAAGAAATCAAAAGCTTTAAAGGAAGAGAAAGTGGAA
ATAGAGGAAAGCAATGCAGGTAGTTCCAAAGAAGAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CACCTATAGCCCTGACCGTGGCAGGAGTTCCAAATCAAACAACTGTACAGAAAAGCCAGG
TGCCTGCTGCCCAGGCTGGTGCAGAAACCAAACCAGCAACAGCAGCAGTCCCGTCTTCTC
AGCTTGTCAAACACGAAACCACATTGGCAAACCCTGACTCATTTGGCATTCGGGCAAAAA
AAGACTAAAGAGCAACTGGCAGAATTAAAAGTCAGCTACCTGAAGAATCAGTTTCCCCAC
GATTCCGAAATTATCAGACTTATGAAAATCACAGGCCTGACTAAAGGAGAGATTAAAAAA
TGGTTCAGCGACACAAGGTACAACCAGAGAAATTCAAAGAGTAATCAGTGCTTACATCTC
AACAATGATTCCTCGGCCACTATTATTATAGACTCCAGTGATGAAACCACGGAATCCCCA
ACTGTTGCGTCACAGCAGAAACAATCCTGGAATCCTTTTCCCGACTTCACTCCCCAAAAG
TTTAAAGAGAAGACGGCAGAGCAGCTCCGTGCCCTTCAGGCGAGTTTTCTCAACAGCTCT
GTGCTTACCGATGAGGAATTAAATAGGTTAAGAGCGCAAACCAAACTCACCAGAAGGGAA
ATTGATGCTTGGTTTACAGAGAAGAAGAAATCAAAAGCTTTAAAGGAAGAGAAAGTGGAA
ATAGAGGAAAGCAATGCAGGTAGTTCCAAAGAAGAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               477-676, + strand, RNAz p=0.837941

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               477-676, + strand, RNAz p=0.837941

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-696, gnl|bosTau2|chr14 (7876593-7877290)
               

               
               1-696, gnl|Hg17|chr8 (124336136-124335439)
               

               
               1-696, gnl|Mm7|chr15 (58118953-58118256)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-696, gnl|bosTau2|chr14 (7876593-7877290)
               

               
               1-696, gnl|Hg17|chr8 (124336136-124335439)
               

               
               1-696, gnl|Mm7|chr15 (58118953-58118256)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               spl (0.143184)
               

               
               eep (0.122564)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spl (0.143184)
               

               
               eep (0.122564)

	1-696, gnl\|bosTau2\|chr14 (7876593-7877290)
	1-696, gnl\|Hg17\|chr8 (124336136-124335439)
	1-696, gnl\|Mm7\|chr15 (58118953-58118256)