Non-Coding RNA Search

Ss1.1-reep28c_m21.5

Sequence:


               
               GCGGACGCGTGGGTGGGGCCTTTTTTTTCTGGGTCCTCTGCCAAAAGCAAAAATGACACC
TTGACTGCTTTAATTCCCTCTCCAGATCTGAAGCCCATGGTCCCAGCTCTCCTAGCATCA
TGCGGTCCCAGGAGGTCCAGGGCTGGGACCACTCACACCCCAGGCTGCTGGGTCTCGGAT
AACTACTTGAGTTAAAAACTGAAATGCATTCCTCTTCTCTGTTTTCTGGTTTTAAAGCTG
TGCTTTTTGCCTTATTTTCCGCAGTTCAGGAAAATAGTGGGTTGCCATTCGGATAGGAAA
CTGAATTTTCTTATCTTTGGCCTAGAAGATCCTTTTTTGGACCAACATTGGGAAGTTGGT
AGTTGGCTCTGTGGAACACAGTAGAATTTTCCCCATTCTGTGCAAAGGAAAAGAGGAGCA
TGGTGGGAAGTCACTGGTTAGAAGAGTAGGCTGCAACACCAGGAAAACCATCCCAAGAGC
TAAGAGGGGGAGATGAAGAACGCCTTCAGTGAGTCGGCCTGTGAGAGGCAACCCACGGTC
CTCTGGATTCTTGACTTTTCTTGCTCTGTTGAGTGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGGACGCGTGGGTGGGGCCTTTTTTTTCTGGGTCCTCTGCCAAAAGCAAAAATGACACC
TTGACTGCTTTAATTCCCTCTCCAGATCTGAAGCCCATGGTCCCAGCTCTCCTAGCATCA
TGCGGTCCCAGGAGGTCCAGGGCTGGGACCACTCACACCCCAGGCTGCTGGGTCTCGGAT
AACTACTTGAGTTAAAAACTGAAATGCATTCCTCTTCTCTGTTTTCTGGTTTTAAAGCTG
TGCTTTTTGCCTTATTTTCCGCAGTTCAGGAAAATAGTGGGTTGCCATTCGGATAGGAAA
CTGAATTTTCTTATCTTTGGCCTAGAAGATCCTTTTTTGGACCAACATTGGGAAGTTGGT
AGTTGGCTCTGTGGAACACAGTAGAATTTTCCCCATTCTGTGCAAAGGAAAAGAGGAGCA
TGGTGGGAAGTCACTGGTTAGAAGAGTAGGCTGCAACACCAGGAAAACCATCCCAAGAGC
TAAGAGGGGGAGATGAAGAACGCCTTCAGTGAGTCGGCCTGTGAGAGGCAACCCACGGTC
CTCTGGATTCTTGACTTTTCTTGCTCTGTTGAGTGC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               69-179, - strand, RNAz p=0.981851

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               69-179, - strand, RNAz p=0.981851

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               32-569, gnl|bosTau2|chr16 (4220969-4221515)
               

               
               32-569, gnl|Hg17|chr1 (203024521-203025069)
               

               
               32-569, gnl|Mm7|chr1 (131192172-131191685)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               32-569, gnl|bosTau2|chr16 (4220969-4221515)
               

               
               32-569, gnl|Hg17|chr1 (203024521-203025069)
               

               
               32-569, gnl|Mm7|chr1 (131192172-131191685)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               eep (0.245128)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eep (0.245128)

	32-569, gnl\|bosTau2\|chr16 (4220969-4221515)
	32-569, gnl\|Hg17\|chr1 (203024521-203025069)
	32-569, gnl\|Mm7\|chr1 (131192172-131191685)