Ss1.1-reep28c_m5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TAGGAGCGAGCGGAGCCGCGATGGAGACCATGGCGAGCCCAGGAAAAGACAATTATCGAA TGAAGAGCTATAAGAACAATGCCCTAAACCCTGAGGAAATGAGGCGAAGAAGAGAGGAAG AGGGCATTCAACTCCGGAAGCAGAAACGGGAGCAACAACTTTTTAAACGGAGAAATGTGG AGCTGATTAATGAAGAAGCTGCCATGTTCGATAGTCTCCTCATGGACTCCTATGTGAGCT CTACCACGGGGGAGAGTGTGATCACAAGAGAGATGGTGGAGATGTTGTTTTCTGATGATT CTGACCTGCAGTTAGCAACCACACAGAAATTCCGGAAACTGCTCTCCAAAGAGCCTAGTC CTCCAATAGATGAAGTTATCAATACTCCAGGAGTGGTGGATCGGTTTGTGGAGTTTCTGA AGAGGAATGAGAATTGTACATTACAGTTTGAAGCTGCCTGGGCTTTAACGAACATTGCCT CTGGAACCTCTCAGCAGACCAAAATTGTCATTGAAGCAAGGGCTGTGCCCATTTTTATAG AGCTGCTTAACTCAGACTTTGAGGATGTACAGGAACAGGCAGTCTGGGCACTGGGAAACA TGGCTGGAGATAGCTCCGTTTGCCGAGATTACGTCCTGGGCTGTTCCATCCTTAATCCTT TGTTAACACTCCTTACCAAGTCCACACGACTGACAATGACACGGAATGCAGTCTGGGCCC TGTCAAATCTTTGCCGCGGGAAGAACCCACCCCCAGAATTTGCACAGGTTTCCCCCTGTT TGCCTGTGCTGTCTCGCCTACTCTTCAGCAGCGACT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TAGGAGCGAGCGGAGCCGCGATGGAGACCATGGCGAGCCCAGGAAAAGACAATTATCGAA TGAAGAGCTATAAGAACAATGCCCTAAACCCTGAGGAAATGAGGCGAAGAAGAGAGGAAG AGGGCATTCAACTCCGGAAGCAGAAACGGGAGCAACAACTTTTTAAACGGAGAAATGTGG AGCTGATTAATGAAGAAGCTGCCATGTTCGATAGTCTCCTCATGGACTCCTATGTGAGCT CTACCACGGGGGAGAGTGTGATCACAAGAGAGATGGTGGAGATGTTGTTTTCTGATGATT CTGACCTGCAGTTAGCAACCACACAGAAATTCCGGAAACTGCTCTCCAAAGAGCCTAGTC CTCCAATAGATGAAGTTATCAATACTCCAGGAGTGGTGGATCGGTTTGTGGAGTTTCTGA AGAGGAATGAGAATTGTACATTACAGTTTGAAGCTGCCTGGGCTTTAACGAACATTGCCT CTGGAACCTCTCAGCAGACCAAAATTGTCATTGAAGCAAGGGCTGTGCCCATTTTTATAG AGCTGCTTAACTCAGACTTTGAGGATGTACAGGAACAGGCAGTCTGGGCACTGGGAAACA TGGCTGGAGATAGCTCCGTTTGCCGAGATTACGTCCTGGGCTGTTCCATCCTTAATCCTT TGTTAACACTCCTTACCAAGTCCACACGACTGACAATGACACGGAATGCAGTCTGGGCCC TGTCAAATCTTTGCCGCGGGAAGAACCCACCCCCAGAATTTGCACAGGTTTCCCCCTGTT TGCCTGTGCTGTCTCGCCTACTCTTCAGCAGCGACT |
| Aligned organism(s): 57 entry(ies) | More info |
| Aligned organism(s): 57 entry(ies) | Help | Less info |
| 24-172, gnl|bosTau2|chr2 (73454091-73454240) | |
| 24-172, gnl|canFam2|chr2 (71936570-71936417) | |
| 24-172, gnl|danRer3|chr11 (7383340-7383490) | |
| 24-172, gnl|dasNov1|scaffold_200195 (609-762) | |
| 24-172, gnl|echTel1|scaffold_312242 (14059-13927) | |
| 24-172, gnl|fr1|chrUn (335932-336082) | |
| 24-172, gnl|galGal2|chr23 (4610177-4610024) | |
| 24-172, gnl|hg17|chr1 (32289281-32289434) | |
| 24-172, gnl|Hg17|chr1 (32289281-32289430) | |
| 24-172, gnl|loxAfr1|scaffold_4669 (63073-62920) | |
| 24-172, gnl|mm7|chr4 (129106089-129105936) | |
| 24-172, gnl|Mm7|chr4 (129106087-129105938) | |
| 24-172, gnl|monDom2|scaffold_43 (7626319-7626169) | |
| 24-172, gnl|oryCun1|scaffold_173340 (14200-14047) | |
| 24-172, gnl|panTro1|chr1 (33048450-33048603) | |
| 24-172, gnl|rheMac2|chr1 (34909466-34909619) | |
| 24-172, gnl|rn3|chr5 (148803639-148803487) | |
| 24-172, gnl|tetNig1|chr21 (4923733-4923596) | |
| 24-172, gnl|xenTro1|scaffold_523 (612905-612768) | |
| 251-351, gnl|bosTau2|chr2 (73457358-73457458) | |
| 251-351, gnl|canFam2|chr2 (71935092-71934961) | |
| 251-351, gnl|danRer3|chr11 (7384020-7384147) | |
| 251-351, gnl|dasNov1|scaffold_11064 (83710-83591) | |
| 251-351, gnl|echTel1|scaffold_126479 (150-281) | |
| 251-351, gnl|fr1|chrUn (336389-336521) | |
| 251-351, gnl|galGal2|chr23 (4608958-4608834) | |
| 251-351, gnl|hg17|chr1 (32292016-32292147) | |
| 251-351, gnl|Hg17|chr1 (32292039-32292139) | |
| 251-351, gnl|loxAfr1|scaffold_12426 (35812-35683) | |
| 251-351, gnl|mm7|chr4 (129102161-129102030) | |
| 251-351, gnl|Mm7|chr4 (129102136-129102036) | |
| 251-351, gnl|monDom2|scaffold_43 (7623979-7623848) | |
| 251-351, gnl|oryCun1|scaffold_173340 (11784-11653) | |
| 251-351, gnl|panTro1|chr1 (33051153-33051284) | |
| 251-351, gnl|rheMac2|chr1 (34912493-34912624) | |
| 251-351, gnl|rn3|chr5 (148800275-148800144) | |
| 251-351, gnl|tetNig1|chr21 (4923225-4923115) | |
| 251-351, gnl|xenTro1|scaffold_523 (611719-611583) | |
| 441-579, gnl|bosTau2|chr2 (73459680-73459818) | |
| 441-579, gnl|canFam2|chr2 (71931687-71931575) | |
| 441-579, gnl|danRer3|chr11 (7384394-7384501) | |
| 441-579, gnl|dasNov1|scaffold_200195 (3640-3752) | |
| 441-579, gnl|echTel1|scaffold_174356 (116-4) | |
| 441-579, gnl|fr1|chrUn (336767-336870) | |
| 441-579, gnl|galGal2|chr23 (4607434-4607328) | |
| 441-579, gnl|hg17|chr1 (32294079-32294191) | |
| 441-579, gnl|Hg17|chr1 (32294088-32294226) | |
| 441-579, gnl|loxAfr1|scaffold_12426 (27010-26898) | |
| 441-579, gnl|mm7|chr4 (129100225-129100113) | |
| 441-579, gnl|Mm7|chr4 (129100214-129100076) | |
| 441-579, gnl|monDom2|scaffold_43 (7622242-7622139) | |
| 441-579, gnl|oryCun1|scaffold_173340 (8989-8877) | |
| 441-579, gnl|panTro1|chr1 (33053216-33053328) | |
| 441-579, gnl|rheMac2|chr1 (34914901-34915013) | |
| 441-579, gnl|rn3|chr5 (148797205-148797093) | |
| 441-579, gnl|tetNig1|chr21 (4922790-4922687) | |
| 441-579, gnl|xenTro1|scaffold_523 (610161-610049) |
| Aligned organism(s): 57 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 24-172, gnl|bosTau2|chr2 (73454091-73454240) | |
| 24-172, gnl|canFam2|chr2 (71936570-71936417) | |
| 24-172, gnl|danRer3|chr11 (7383340-7383490) | |
| 24-172, gnl|dasNov1|scaffold_200195 (609-762) | |
| 24-172, gnl|echTel1|scaffold_312242 (14059-13927) | |
| 24-172, gnl|fr1|chrUn (335932-336082) | |
| 24-172, gnl|galGal2|chr23 (4610177-4610024) | |
| 24-172, gnl|hg17|chr1 (32289281-32289434) | |
| 24-172, gnl|Hg17|chr1 (32289281-32289430) | |
| 24-172, gnl|loxAfr1|scaffold_4669 (63073-62920) | |
| 24-172, gnl|mm7|chr4 (129106089-129105936) | |
| 24-172, gnl|Mm7|chr4 (129106087-129105938) | |
| 24-172, gnl|monDom2|scaffold_43 (7626319-7626169) | |
| 24-172, gnl|oryCun1|scaffold_173340 (14200-14047) | |
| 24-172, gnl|panTro1|chr1 (33048450-33048603) | |
| 24-172, gnl|rheMac2|chr1 (34909466-34909619) | |
| 24-172, gnl|rn3|chr5 (148803639-148803487) | |
| 24-172, gnl|tetNig1|chr21 (4923733-4923596) | |
| 24-172, gnl|xenTro1|scaffold_523 (612905-612768) | |
| 251-351, gnl|bosTau2|chr2 (73457358-73457458) | |
| 251-351, gnl|canFam2|chr2 (71935092-71934961) | |
| 251-351, gnl|danRer3|chr11 (7384020-7384147) | |
| 251-351, gnl|dasNov1|scaffold_11064 (83710-83591) | |
| 251-351, gnl|echTel1|scaffold_126479 (150-281) | |
| 251-351, gnl|fr1|chrUn (336389-336521) | |
| 251-351, gnl|galGal2|chr23 (4608958-4608834) | |
| 251-351, gnl|hg17|chr1 (32292016-32292147) | |
| 251-351, gnl|Hg17|chr1 (32292039-32292139) | |
| 251-351, gnl|loxAfr1|scaffold_12426 (35812-35683) | |
| 251-351, gnl|mm7|chr4 (129102161-129102030) | |
| 251-351, gnl|Mm7|chr4 (129102136-129102036) | |
| 251-351, gnl|monDom2|scaffold_43 (7623979-7623848) | |
| 251-351, gnl|oryCun1|scaffold_173340 (11784-11653) | |
| 251-351, gnl|panTro1|chr1 (33051153-33051284) | |
| 251-351, gnl|rheMac2|chr1 (34912493-34912624) | |
| 251-351, gnl|rn3|chr5 (148800275-148800144) | |
| 251-351, gnl|tetNig1|chr21 (4923225-4923115) | |
| 251-351, gnl|xenTro1|scaffold_523 (611719-611583) | |
| 441-579, gnl|bosTau2|chr2 (73459680-73459818) | |
| 441-579, gnl|canFam2|chr2 (71931687-71931575) | |
| 441-579, gnl|danRer3|chr11 (7384394-7384501) | |
| 441-579, gnl|dasNov1|scaffold_200195 (3640-3752) | |
| 441-579, gnl|echTel1|scaffold_174356 (116-4) | |
| 441-579, gnl|fr1|chrUn (336767-336870) | |
| 441-579, gnl|galGal2|chr23 (4607434-4607328) | |
| 441-579, gnl|hg17|chr1 (32294079-32294191) | |
| 441-579, gnl|Hg17|chr1 (32294088-32294226) | |
| 441-579, gnl|loxAfr1|scaffold_12426 (27010-26898) | |
| 441-579, gnl|mm7|chr4 (129100225-129100113) | |
| 441-579, gnl|Mm7|chr4 (129100214-129100076) | |
| 441-579, gnl|monDom2|scaffold_43 (7622242-7622139) | |
| 441-579, gnl|oryCun1|scaffold_173340 (8989-8877) | |
| 441-579, gnl|panTro1|chr1 (33053216-33053328) | |
| 441-579, gnl|rheMac2|chr1 (34914901-34915013) | |
| 441-579, gnl|rn3|chr5 (148797205-148797093) | |
| 441-579, gnl|tetNig1|chr21 (4922790-4922687) | |
| 441-579, gnl|xenTro1|scaffold_523 (610161-610049) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ese (0.126502) | |
| eep (0.122564) |