Non-Coding RNA Search

Ss1.1-reep29c_e17.5

Sequence:


               
               AAACCTCGTCTGGCTCCTCACTCCAGCTCAGCGGCGGCACACGCCCCTGATCGCCACTCG
CCTCGCTGCTTCTGGGCGCCGCGCCGCCAGCCTAGCTCCGGCTCCTTTTGCTTCTCTCCC
TCCACCCTAGGCAGGTGACAGCAGGGACATGTCTCGGGAGCTGCAGGACGTGGACCTCGC
GGAGGTGAAGCCTTTGGTGGAGAAAGGGGAGACCATCACCGGCCTCCTGCAAGAGTTTGA
CGTGCAGGAGCAGGACATCGAGACTTTGCATGGCTCCATTCACGTCACGCTGTGCGGGAC
CCCCAAGGGAAACCGGCCCGTCATCCTCACCTACCATGACATTGGCATGAACCACAAGAC
CTGCTACAACCCCCTCTTCAACTCGGAGGACATGCAGGAGATCACCCAGCACTTTGCCGT
CTGCCACGTGGATGCCCCGGGCCAGCAGGACGGTGCTGCCTCCTTCCCCGCGGGGTACAT
GTACCCGTCCATGGACCAGCTGGCTGAAATGCTTCCTGGAGTCCTCCAGAAGCAGGCTCC
GAAAAGCATTATTGGCATGGGAACTGGAGCGGGCGCCTACATTCTCACTCGATTTGCTCT
GAACAACCCCGAGATGGTGGAGGGCCTCGTCCTCATCAACGTGAACCCTTGCGCGGAAGG
CTGGATGGACTGGGCCGCCTCCAAGGTGAGACCGGGGGCCTGGGTCGGGCAGGCGGAGGG
GCGGGGGAGGGGGTCCCAGCCTGCAGAGGGGCAGGTGTGTCCAACTCCCCCTGGAGGACC
ATCGAGAGACCTCTCCTGGCCCCTCTCCTCCACCACTGCCAGCAAAGAAACTTCCTCTGC
TTGGCTTTGAACAGTGAACGTGACCTCAACCATGTGCCATTCGGAAATCAGTGGGACATG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAACCTCGTCTGGCTCCTCACTCCAGCTCAGCGGCGGCACACGCCCCTGATCGCCACTCG
CCTCGCTGCTTCTGGGCGCCGCGCCGCCAGCCTAGCTCCGGCTCCTTTTGCTTCTCTCCC
TCCACCCTAGGCAGGTGACAGCAGGGACATGTCTCGGGAGCTGCAGGACGTGGACCTCGC
GGAGGTGAAGCCTTTGGTGGAGAAAGGGGAGACCATCACCGGCCTCCTGCAAGAGTTTGA
CGTGCAGGAGCAGGACATCGAGACTTTGCATGGCTCCATTCACGTCACGCTGTGCGGGAC
CCCCAAGGGAAACCGGCCCGTCATCCTCACCTACCATGACATTGGCATGAACCACAAGAC
CTGCTACAACCCCCTCTTCAACTCGGAGGACATGCAGGAGATCACCCAGCACTTTGCCGT
CTGCCACGTGGATGCCCCGGGCCAGCAGGACGGTGCTGCCTCCTTCCCCGCGGGGTACAT
GTACCCGTCCATGGACCAGCTGGCTGAAATGCTTCCTGGAGTCCTCCAGAAGCAGGCTCC
GAAAAGCATTATTGGCATGGGAACTGGAGCGGGCGCCTACATTCTCACTCGATTTGCTCT
GAACAACCCCGAGATGGTGGAGGGCCTCGTCCTCATCAACGTGAACCCTTGCGCGGAAGG
CTGGATGGACTGGGCCGCCTCCAAGGTGAGACCGGGGGCCTGGGTCGGGCAGGCGGAGGG
GCGGGGGAGGGGGTCCCAGCCTGCAGAGGGGCAGGTGTGTCCAACTCCCCCTGGAGGACC
ATCGAGAGACCTCTCCTGGCCCCTCTCCTCCACCACTGCCAGCAAAGAAACTTCCTCTGC
TTGGCTTTGAACAGTGAACGTGACCTCAACCATGTGCCATTCGGAAATCAGTGGGACATG

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q5TH29_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q5TH29_HUMAN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               666-890, - strand, RNAz p=0.997755

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               666-890, - strand, RNAz p=0.997755

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               354-477, gnl|bosTau2|chr14 (3790189-3790312)
               

               
               354-477, gnl|Hg17|chr8 (134343592-134343469)
               

               
               354-477, gnl|Mm7|chr15 (67030231-67030108)
               


               
               588-890, gnl|bosTau2|chr14 (3796219-3796513)
               

               
               588-890, gnl|Hg17|chr8 (134338300-134338001)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               354-477, gnl|bosTau2|chr14 (3790189-3790312)
               

               
               354-477, gnl|Hg17|chr8 (134343592-134343469)
               

               
               354-477, gnl|Mm7|chr15 (67030231-67030108)
               


               
               588-890, gnl|bosTau2|chr14 (3796219-3796513)
               

               
               588-890, gnl|Hg17|chr8 (134338300-134338001)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               eep (0.122564)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eep (0.122564)

	354-477, gnl\|bosTau2\|chr14 (3790189-3790312)
	354-477, gnl\|Hg17\|chr8 (134343592-134343469)
	354-477, gnl\|Mm7\|chr15 (67030231-67030108)

	588-890, gnl\|bosTau2\|chr14 (3796219-3796513)
	588-890, gnl\|Hg17\|chr8 (134338300-134338001)