Non-Coding RNA Search

Ss1.1-reep29c_f8.5

Sequence:


               
               TTTTTGTACAGTCCCTGTGGCTCGGAGTTGACCAAACGTAGTGAATGCAGTTAGCACCAA
AGGCCGGCCCACCCTGCCCTCAGCGTCATTCCCGCCTTTTGAGGTTGCTGGGACCGCCTG
CACTGCAGCCGCCTCCTCCCTCAGATTTTCAGCTACTGATGTTACAAACAGTAAAATATT
GGAACATAGACTTGAGGAAAAGACTTAAATCAGATTTGTCTTCTGTTAGTTAAAAATATG
GATCCTGAAGCAGAGGGACCAGCAATTATCACGGTGACACCTCTTCAACAAATGCTTGCC
TCTTGTACAGGAGCTATACTGACATCACTGATGGTGACACCCTTTGATGTTGTTAAAATT
CGACTCCAAGCCCAAAACAACCCATTCTCCAAAGGAAAATGCTTTGTGTATAGTAATGGA
CTTATGGATCACCTATGTATCTGTGAAGAAGAAGGCAACAAAGCATGGTATAAGAAGCCA
GGACGTTTCCAGGGAACGCTGGATGCCTTTTTGAAAATCATTCGAAATGAAGGCATTAAA
TCCCTGTGGAGCGGCCTTCCTCCTACCTTAGTGATGGCAGTTCCTGCCACAGTTATTTAT
TTTACCTGCTATGATCAATTAACTGCTCTTCTGAGATCTAAATTAGGAGAAAATGAAAGC
AGCATACCAGTTGTTGCTGGAATTGTGGCCAGACTTGGTGCAGTAACTGTAATAAGTCCA
CTGGAATTGATTAGAACCAAGATGCAGTCTAAGACATTTTCTTACAAGGAACTGCATCAA
TTTGTCAGCCGGAAAGTATCTGAAGATGGTTGGATTTCCCTCTGGAGGGGTTGGGCTCCT
ACTGTTCTTAGAGATGTGCCATTCTCAGCACTGTACTGGTATAACTATGAAGTTTTAAAG
AAGTGGTTGTGTGCAAAATCTGGTTTATATGAACCAACATTTATGATCACTTTTACTTCA
GGAGCATTGTCTGGTTCTTTTGCAGCTGTTGTAACTTTGCCATTTGATGTGGTAAAAACA
CAAAAGCAGACACAACTTTGGACATATGAAAGTCATAAAAGTAAGTTTAATTAATATAAA
ACATTTTCAGGATGCCATGAATATTTTTATTTTTCTTTCCAGATACTAGGTTAGGAATAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTGTACAGTCCCTGTGGCTCGGAGTTGACCAAACGTAGTGAATGCAGTTAGCACCAA
AGGCCGGCCCACCCTGCCCTCAGCGTCATTCCCGCCTTTTGAGGTTGCTGGGACCGCCTG
CACTGCAGCCGCCTCCTCCCTCAGATTTTCAGCTACTGATGTTACAAACAGTAAAATATT
GGAACATAGACTTGAGGAAAAGACTTAAATCAGATTTGTCTTCTGTTAGTTAAAAATATG
GATCCTGAAGCAGAGGGACCAGCAATTATCACGGTGACACCTCTTCAACAAATGCTTGCC
TCTTGTACAGGAGCTATACTGACATCACTGATGGTGACACCCTTTGATGTTGTTAAAATT
CGACTCCAAGCCCAAAACAACCCATTCTCCAAAGGAAAATGCTTTGTGTATAGTAATGGA
CTTATGGATCACCTATGTATCTGTGAAGAAGAAGGCAACAAAGCATGGTATAAGAAGCCA
GGACGTTTCCAGGGAACGCTGGATGCCTTTTTGAAAATCATTCGAAATGAAGGCATTAAA
TCCCTGTGGAGCGGCCTTCCTCCTACCTTAGTGATGGCAGTTCCTGCCACAGTTATTTAT
TTTACCTGCTATGATCAATTAACTGCTCTTCTGAGATCTAAATTAGGAGAAAATGAAAGC
AGCATACCAGTTGTTGCTGGAATTGTGGCCAGACTTGGTGCAGTAACTGTAATAAGTCCA
CTGGAATTGATTAGAACCAAGATGCAGTCTAAGACATTTTCTTACAAGGAACTGCATCAA
TTTGTCAGCCGGAAAGTATCTGAAGATGGTTGGATTTCCCTCTGGAGGGGTTGGGCTCCT
ACTGTTCTTAGAGATGTGCCATTCTCAGCACTGTACTGGTATAACTATGAAGTTTTAAAG
AAGTGGTTGTGTGCAAAATCTGGTTTATATGAACCAACATTTATGATCACTTTTACTTCA
GGAGCATTGTCTGGTTCTTTTGCAGCTGTTGTAACTTTGCCATTTGATGTGGTAAAAACA
CAAAAGCAGACACAACTTTGGACATATGAAAGTCATAAAAGTAAGTTTAATTAATATAAA
ACATTTTCAGGATGCCATGAATATTTTTATTTTTCTTTCCAGATACTAGGTTAGGAATAT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|51094926|gb|EAL24171.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|51094926|gb|EAL24171.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               966-1140, gnl|bosTau2|chr4 (12414108-12414274)
               

               
               966-1140, gnl|Hg17|chr7 (87115697-87115528)
               

               
               966-1140, gnl|Mm7|chr5 (8487244-8487403)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               966-1140, gnl|bosTau2|chr4 (12414108-12414274)
               

               
               966-1140, gnl|Hg17|chr7 (87115697-87115528)
               

               
               966-1140, gnl|Mm7|chr5 (8487244-8487403)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               eje (0.197668)
               

               
               spl (0.143184)
               

               
               cst (0.140036)
               

               
               eep (0.122564)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eje (0.197668)
               

               
               spl (0.143184)
               

               
               cst (0.140036)
               

               
               eep (0.122564)

	966-1140, gnl\|bosTau2\|chr4 (12414108-12414274)
	966-1140, gnl\|Hg17\|chr7 (87115697-87115528)
	966-1140, gnl\|Mm7\|chr5 (8487244-8487403)