Ss1.1-reep29c_h15.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGGAGGTGTCTCCTGCACAGTTGTGCCACCGAGAAGGACAGCAAAAAGATGAAGGTCTTA GAGTCATTGATTGGAATGATTCAGAAATTCCCTTATGACGACCCTACTTACGATAAACTC CACGAAGACTTAGACAGGATCAGAGGGAAGTTTAAGCAGCTTTGTTCGTTACTAAACGTT CAGCCGGACTTTAAAATTAGTGCGGAAGGTTCTGGACTTGCCTTTTGAGGTGGACAGACG AACAAAAGACGAACCATCGAGGAACAGATGTCCGTATGTTAAGTGTTCAAAACTGTGATT AAAGGCAAAACAGTGGCGGGTGTTCATTGTTCTGCGGGGAGGCTTCCTGCCCCCAGGTCC GCCTGTGTCGCCTGGGTGCCCGCGGGGCCTCCGCTCAGGCCTGCCCTTTGTTGGGCCCTG TCTGCTCTGCAGTCAGCCTGCGGCCCTGGCCGAGCCCTCGTGGGGCCTCTCCCTCAGGTC CAGGGTCCGGGCCACTGGCCTCACAGGTTCTCGCCACCTGGCAGGCCTGGCTGGGTCTAG ACTGGGGCTGGCTCTGGGGAGAATTAACCTCCAGGCCTTGGTCAGCGCCCAGAGGAACAG TTTCTTAAAAAGATGAGAGTGACAGGGAGTTCCCGTTGGGGCGCAGCAGAGATGAATCTG ACTACTCTCCACGAGGGTGCGGGT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGGAGGTGTCTCCTGCACAGTTGTGCCACCGAGAAGGACAGCAAAAAGATGAAGGTCTTA GAGTCATTGATTGGAATGATTCAGAAATTCCCTTATGACGACCCTACTTACGATAAACTC CACGAAGACTTAGACAGGATCAGAGGGAAGTTTAAGCAGCTTTGTTCGTTACTAAACGTT CAGCCGGACTTTAAAATTAGTGCGGAAGGTTCTGGACTTGCCTTTTGAGGTGGACAGACG AACAAAAGACGAACCATCGAGGAACAGATGTCCGTATGTTAAGTGTTCAAAACTGTGATT AAAGGCAAAACAGTGGCGGGTGTTCATTGTTCTGCGGGGAGGCTTCCTGCCCCCAGGTCC GCCTGTGTCGCCTGGGTGCCCGCGGGGCCTCCGCTCAGGCCTGCCCTTTGTTGGGCCCTG TCTGCTCTGCAGTCAGCCTGCGGCCCTGGCCGAGCCCTCGTGGGGCCTCTCCCTCAGGTC CAGGGTCCGGGCCACTGGCCTCACAGGTTCTCGCCACCTGGCAGGCCTGGCTGGGTCTAG ACTGGGGCTGGCTCTGGGGAGAATTAACCTCCAGGCCTTGGTCAGCGCCCAGAGGAACAG TTTCTTAAAAAGATGAGAGTGACAGGGAGTTCCCGTTGGGGCGCAGCAGAGATGAATCTG ACTACTCTCCACGAGGGTGCGGGT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 493-627, - strand, RNAz p=0.953266 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 493-627, - strand, RNAz p=0.953266 |
| Aligned organism(s): 29 entry(ies) | More info |
| Aligned organism(s): 29 entry(ies) | Help | Less info |
| 38-165, gnl|bosTau2|chr29 (40834952-40834825) | |
| 38-165, gnl|canFam2|chr18 (51514724-51514617) | |
| 38-165, gnl|canFam2|chr18 (51514672-51514581) | |
| 38-165, gnl|echTel1|scaffold_265622 (2449-2552) | |
| 38-165, gnl|echTel1|scaffold_265622 (2497-2588) | |
| 38-165, gnl|galGal2|chr5 (14807885-14807992) | |
| 38-165, gnl|hg17|chr11 (69191820-69191927) | |
| 38-165, gnl|Hg17|chr11 (69191965-69191838) | |
| 38-165, gnl|hg17|chr4 (187467250-187467342) | |
| 38-165, gnl|mm7|chr7 (141344609-141344504) | |
| 38-165, gnl|mm7|chr7 (141344559-141344468) | |
| 38-165, gnl|Mm7|chr7 (141344465-141344591) | |
| 38-165, gnl|monDom2|scaffold_182 (994698-994792) | |
| 38-165, gnl|oryCun1|scaffold_127363 (4443-4364) | |
| 38-165, gnl|oryCun1|scaffold_127363 (4419-4336) | |
| 38-165, gnl|panTro1|chr3 (205688098-205688190) | |
| 38-165, gnl|panTro1|chr9 (70310246-70310353) | |
| 38-165, gnl|rheMac2|chr14 (5101858-5101751) | |
| 38-165, gnl|rheMac2|chr5 (178299430-178299522) | |
| 38-165, gnl|rn3|chr1 (205500478-205500372) | |
| 38-165, gnl|rn3|chr1 (205500427-205500336) | |
| 38-165, gnl|tetNig1|chrUn_random (170287877-170287792) | |
| 38-165, gnl|tetNig1|chrUn_random (170287857-170287755) | |
| 341-627, gnl|bosTau2|chr29 (40834373-40834079) | |
| 341-627, gnl|canFam2|chr18 (51515481-51515155) | |
| 341-627, gnl|hg17|chr4 (187466721-187467033) | |
| 341-627, gnl|panTro1|chr3 (205687571-205687881) | |
| 341-627, gnl|rheMac2|chr5 (178298907-178299203) | |
| 341-627, gnl|rn3|chr1 (205501025-205500848) |
| Aligned organism(s): 29 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 38-165, gnl|bosTau2|chr29 (40834952-40834825) | |
| 38-165, gnl|canFam2|chr18 (51514724-51514617) | |
| 38-165, gnl|canFam2|chr18 (51514672-51514581) | |
| 38-165, gnl|echTel1|scaffold_265622 (2449-2552) | |
| 38-165, gnl|echTel1|scaffold_265622 (2497-2588) | |
| 38-165, gnl|galGal2|chr5 (14807885-14807992) | |
| 38-165, gnl|hg17|chr11 (69191820-69191927) | |
| 38-165, gnl|Hg17|chr11 (69191965-69191838) | |
| 38-165, gnl|hg17|chr4 (187467250-187467342) | |
| 38-165, gnl|mm7|chr7 (141344609-141344504) | |
| 38-165, gnl|mm7|chr7 (141344559-141344468) | |
| 38-165, gnl|Mm7|chr7 (141344465-141344591) | |
| 38-165, gnl|monDom2|scaffold_182 (994698-994792) | |
| 38-165, gnl|oryCun1|scaffold_127363 (4443-4364) | |
| 38-165, gnl|oryCun1|scaffold_127363 (4419-4336) | |
| 38-165, gnl|panTro1|chr3 (205688098-205688190) | |
| 38-165, gnl|panTro1|chr9 (70310246-70310353) | |
| 38-165, gnl|rheMac2|chr14 (5101858-5101751) | |
| 38-165, gnl|rheMac2|chr5 (178299430-178299522) | |
| 38-165, gnl|rn3|chr1 (205500478-205500372) | |
| 38-165, gnl|rn3|chr1 (205500427-205500336) | |
| 38-165, gnl|tetNig1|chrUn_random (170287877-170287792) | |
| 38-165, gnl|tetNig1|chrUn_random (170287857-170287755) | |
| 341-627, gnl|bosTau2|chr29 (40834373-40834079) | |
| 341-627, gnl|canFam2|chr18 (51515481-51515155) | |
| 341-627, gnl|hg17|chr4 (187466721-187467033) | |
| 341-627, gnl|panTro1|chr3 (205687571-205687881) | |
| 341-627, gnl|rheMac2|chr5 (178298907-178299203) | |
| 341-627, gnl|rn3|chr1 (205501025-205500848) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| eep (0.122564) | |
| nbm (0.0993246) |