Non-Coding RNA Search

Ss1.1-reep29c_l8.5

Sequence:


               
               CAATGGAGACCGGGTGCTGGTTGCTCGGCGGCGAGTTTGAGGACTCTGTGTTCGAGGAGA
GGCGGGAGCGGCAGCTTGGACCGCCATCGTCCTACATCGCCAAGCGCTGCGAGCCGCAGT
GGTTTTATGAAGACTCAGGGAGCAGTGATGATGTGGAAGCTCTAACCATCCAGAAATTCA
AAGGGGACCTGGCCTACAGACGGCAAGAGTATCAGAAAGCTCTGCAGGAATATTCCAGTA
TCTCAGAAAAACTGCCATCTACGAATTTTGCCATGAAAAGGGATGTCCAGGAAGGCCAGG
CTCGGTGTCTTGTTCACCTGGGAAGGCATGAGGAGGCCCTGGAGATTGCTACAAACTTGG
AAAATAAGGCAACTAATACAGACCATTTAACCACTGTGCTCTACCTCCAGTTTGCTATTT
GTTCAAGTTTGCAGAACTTGGAGAAAACAATTTTCTGCCTACAGAAACTGATTTCTTTGC
ATCCCTTTAATCCTTGGAACTGGGGGAAGTTGGCAGAGGCTTACTTGAATCGGGGGCTGG
CGCTTTCAGCATCCTTTGCATCATCTCAGGAACAGAACACCTTGAGTGACAAAACTCTCA
AATCCTGCTTTCCCCACTTGAGAAAAGACTGTCTTCTGTGTTTCCCTGAAATGAGCTCTG
TGTTTTCTGTGGAAGCGAGCAGCGGTGACAACCAGAAGAATGAGAAAGCTCTTAAAAATA
TTCAAAACCGTGTGGCAGAAGAGAGAGCGGCGGTGTTACTACCAGAAACTCAGATGAAAG
CCTGTGCCTCTTTTATACGAACCAGGCTTTTGCTTCAGCTTGCCCAATCTCAGCAAACAT
CGTTTGCTTTGGAGAGGAACTTAAGGACTCAGCAGGAAATTGAGGATAAAATGAAAGGGT
TCAGCTTCAAAGAAGACACTTTGCTGTTGATAGCAGAGGTTATGGGAGAAGATATCGTCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAATGGAGACCGGGTGCTGGTTGCTCGGCGGCGAGTTTGAGGACTCTGTGTTCGAGGAGA
GGCGGGAGCGGCAGCTTGGACCGCCATCGTCCTACATCGCCAAGCGCTGCGAGCCGCAGT
GGTTTTATGAAGACTCAGGGAGCAGTGATGATGTGGAAGCTCTAACCATCCAGAAATTCA
AAGGGGACCTGGCCTACAGACGGCAAGAGTATCAGAAAGCTCTGCAGGAATATTCCAGTA
TCTCAGAAAAACTGCCATCTACGAATTTTGCCATGAAAAGGGATGTCCAGGAAGGCCAGG
CTCGGTGTCTTGTTCACCTGGGAAGGCATGAGGAGGCCCTGGAGATTGCTACAAACTTGG
AAAATAAGGCAACTAATACAGACCATTTAACCACTGTGCTCTACCTCCAGTTTGCTATTT
GTTCAAGTTTGCAGAACTTGGAGAAAACAATTTTCTGCCTACAGAAACTGATTTCTTTGC
ATCCCTTTAATCCTTGGAACTGGGGGAAGTTGGCAGAGGCTTACTTGAATCGGGGGCTGG
CGCTTTCAGCATCCTTTGCATCATCTCAGGAACAGAACACCTTGAGTGACAAAACTCTCA
AATCCTGCTTTCCCCACTTGAGAAAAGACTGTCTTCTGTGTTTCCCTGAAATGAGCTCTG
TGTTTTCTGTGGAAGCGAGCAGCGGTGACAACCAGAAGAATGAGAAAGCTCTTAAAAATA
TTCAAAACCGTGTGGCAGAAGAGAGAGCGGCGGTGTTACTACCAGAAACTCAGATGAAAG
CCTGTGCCTCTTTTATACGAACCAGGCTTTTGCTTCAGCTTGCCCAATCTCAGCAAACAT
CGTTTGCTTTGGAGAGGAACTTAAGGACTCAGCAGGAAATTGAGGATAAAATGAAAGGGT
TCAGCTTCAAAGAAGACACTTTGCTGTTGATAGCAGAGGTTATGGGAGAAGATATCGTCC

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|61877649|ref|XP_584232.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61877649|ref|XP_584232.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               398-517, - strand, RNAz p=0.970347
               

               
               558-662, - strand, RNAz p=0.555015

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               398-517, - strand, RNAz p=0.970347
               

               
               558-662, - strand, RNAz p=0.555015

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-119, gnl|bosTau2|chr14 (7891388-7891506)
               

               
               1-119, gnl|Hg17|chr8 (124322769-124322651)
               

               
               1-119, gnl|Mm7|chr15 (58099538-58099420)
               


               
               359-806, gnl|bosTau2|chr14 (7899543-7899993)
               

               
               359-806, gnl|Hg17|chr8 (124313179-124312720)
               

               
               359-806, gnl|Mm7|chr15 (58094381-58093949)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-119, gnl|bosTau2|chr14 (7891388-7891506)
               

               
               1-119, gnl|Hg17|chr8 (124322769-124322651)
               

               
               1-119, gnl|Mm7|chr15 (58099538-58099420)
               


               
               359-806, gnl|bosTau2|chr14 (7899543-7899993)
               

               
               359-806, gnl|Hg17|chr8 (124313179-124312720)
               

               
               359-806, gnl|Mm7|chr15 (58094381-58093949)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               elu (0.385356)
               

               
               spl (0.286369)
               

               
               tbr (0.154178)
               

               
               pla (0.133672)
               

               
               nmm (0.132802)
               

               
               eep (0.122564)
               

               
               jej (0.0989218)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               elu (0.385356)
               

               
               spl (0.286369)
               

               
               tbr (0.154178)
               

               
               pla (0.133672)
               

               
               nmm (0.132802)
               

               
               eep (0.122564)
               

               
               jej (0.0989218)

	398-517, - strand, RNAz p=0.970347
	558-662, - strand, RNAz p=0.555015

	1-119, gnl\|bosTau2\|chr14 (7891388-7891506)
	1-119, gnl\|Hg17\|chr8 (124322769-124322651)
	1-119, gnl\|Mm7\|chr15 (58099538-58099420)

	359-806, gnl\|bosTau2\|chr14 (7899543-7899993)
	359-806, gnl\|Hg17\|chr8 (124313179-124312720)
	359-806, gnl\|Mm7\|chr15 (58094381-58093949)

	elu (0.385356)
	spl (0.286369)
	tbr (0.154178)
	pla (0.133672)
	nmm (0.132802)
	eep (0.122564)
	jej (0.0989218)