Non-Coding RNA Search

Ss1.1-reep29c_o13.5

Sequence:


               
               GTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAGAAT
GGCCTGATTATTGGCTATCCCACTTTTCAGCCCAGGCACATTGCTGGCAATTTAATTTAT
TTACCTTTTTTTTTTTTTTTTTTTAAAGAAAGGAAAAAGAAAAAAAAATTAACAAAATTT
AAAACTTTCCTTTTGCTGGTCCTGTTGTGGGGATTCTGGATAGGGTGGGACAGGGATGGG
ATCTGTTTTGTATTTTTCCTTTTCAGCACAACCTTTGGCTTTAATATAGGAAGGGCCAAG
GAAGTCCTTGGCTGAACCGAAGTCTGCCCCAGTCCTCGATAAGCCATCTAAGGTGAGGAG
CTTCCTCTCTTCCAGTGATGGTTTTGACAGTCCAGCATCAATGCCTATGTCCTCTGGAGA
ACTTCGCTCCCGGCCCATCCAGAGTCTCATTGCAAAACTCTGGGCTTAAGAGTATTAATT
TCAAAGAAATCCGGCCAACCCCTTCCCCCGCCCCCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAGAAT
GGCCTGATTATTGGCTATCCCACTTTTCAGCCCAGGCACATTGCTGGCAATTTAATTTAT
TTACCTTTTTTTTTTTTTTTTTTTAAAGAAAGGAAAAAGAAAAAAAAATTAACAAAATTT
AAAACTTTCCTTTTGCTGGTCCTGTTGTGGGGATTCTGGATAGGGTGGGACAGGGATGGG
ATCTGTTTTGTATTTTTCCTTTTCAGCACAACCTTTGGCTTTAATATAGGAAGGGCCAAG
GAAGTCCTTGGCTGAACCGAAGTCTGCCCCAGTCCTCGATAAGCCATCTAAGGTGAGGAG
CTTCCTCTCTTCCAGTGATGGTTTTGACAGTCCAGCATCAATGCCTATGTCCTCTGGAGA
ACTTCGCTCCCGGCCCATCCAGAGTCTCATTGCAAAACTCTGGGCTTAAGAGTATTAATT
TCAAAGAAATCCGGCCAACCCCTTCCCCCGCCCCCA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               38-189, - strand, RNAz p=0.959168
               

               
               225-381, + strand, RNAz p=0.953086

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               38-189, - strand, RNAz p=0.959168
               

               
               225-381, + strand, RNAz p=0.953086

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               38-469, gnl|bosTau2|chr5 (33426445-33426868)
               

               
               38-469, gnl|Hg17|chr12 (54885621-54885202)
               

               
               38-469, gnl|Mm7|chr10 (127940780-127941157)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               38-469, gnl|bosTau2|chr5 (33426445-33426868)
               

               
               38-469, gnl|Hg17|chr12 (54885621-54885202)
               

               
               38-469, gnl|Mm7|chr10 (127940780-127941157)

Expressed library(ies): 3 entry(ies)

More info

Expressed library(ies): 3 entry(ies)

Help | Less info


               
               nep (0.183925)
               

               
               eep (0.122564)
               

               
               ebs (0.118301)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nep (0.183925)
               

               
               eep (0.122564)
               

               
               ebs (0.118301)

	38-189, - strand, RNAz p=0.959168
	225-381, + strand, RNAz p=0.953086

	38-469, gnl\|bosTau2\|chr5 (33426445-33426868)
	38-469, gnl\|Hg17\|chr12 (54885621-54885202)
	38-469, gnl\|Mm7\|chr10 (127940780-127941157)