Non-Coding RNA Search

Ss1.1-reep29c_o6.5

Sequence:


               
               CTGGGTTGCTGGCCAACTCAGGCTTTGCTCAATACCGGGGAAGGTGAAGGTGGACAGCGG
CAGCCAGGCCGCCCGAAGCCCTCAAGGATGGAGGTCCTGGACGAGTTCGACAGCGAGTTC
CCCCAGAGTGTGGCCTTCTGCCAGCTCATCTCGGAGGAGGACTTCGAGAGGCAGGCGGTG
ACTTACACGGAGCGCGCGCTGCGCCGCCTCTTCCGCAGCATCGACCGCAACCCGGCGCTG
GCCGAGAGGGTGGCCAAATTCTCCAGCGCCATCCAGGGGGAGCTGAACTGTTGCAACAGC
ATGGGCGCCCGGGAGATGCACCGGCGCCTGGAGCAGCTGAAGAGGCGCATCCACCGCGTG
CACCTCTACTCCCAGGATGCCAAGAAGAAGAGAAGGAAGCCAAAAGCAAAGAAACCAGAG
CCTATCATCTTGCGAGATCAGTCGACCTCCCCGTGCCTACCACCGACCCTGCTGCCACCT
CCGCCACTGCCACCACCTGCCACCACCGTGACCTCCATGGTGGCACCATCACCTCCTGTC
TACACCATGCCCAGGGTCTTTGGCCCCTTCCCTCCG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGGGTTGCTGGCCAACTCAGGCTTTGCTCAATACCGGGGAAGGTGAAGGTGGACAGCGG
CAGCCAGGCCGCCCGAAGCCCTCAAGGATGGAGGTCCTGGACGAGTTCGACAGCGAGTTC
CCCCAGAGTGTGGCCTTCTGCCAGCTCATCTCGGAGGAGGACTTCGAGAGGCAGGCGGTG
ACTTACACGGAGCGCGCGCTGCGCCGCCTCTTCCGCAGCATCGACCGCAACCCGGCGCTG
GCCGAGAGGGTGGCCAAATTCTCCAGCGCCATCCAGGGGGAGCTGAACTGTTGCAACAGC
ATGGGCGCCCGGGAGATGCACCGGCGCCTGGAGCAGCTGAAGAGGCGCATCCACCGCGTG
CACCTCTACTCCCAGGATGCCAAGAAGAAGAGAAGGAAGCCAAAAGCAAAGAAACCAGAG
CCTATCATCTTGCGAGATCAGTCGACCTCCCCGTGCCTACCACCGACCCTGCTGCCACCT
CCGCCACTGCCACCACCTGCCACCACCGTGACCTCCATGGTGGCACCATCACCTCCTGTC
TACACCATGCCCAGGGTCTTTGGCCCCTTCCCTCCG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q8BTA4_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q8BTA4_MOUSE

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               463-576, - strand, RNAz p=0.781459

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               463-576, - strand, RNAz p=0.781459

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               362-576, gnl|bosTau2|chr17 (45438073-45438277)
               

               
               362-576, gnl|canFam2|chr26 (33994372-33994629)
               

               
               362-576, gnl|echTel1|scaffold_155588 (1562-1806)
               

               
               362-576, gnl|hg17|chr22 (20339562-20339832)
               

               
               362-576, gnl|Hg17|chr22 (20339666-20339831)
               

               
               362-576, gnl|loxAfr1|scaffold_6198 (105260-105548)
               

               
               362-576, gnl|mm7|chr16 (16668347-16668079)
               

               
               362-576, gnl|Mm7|chr16 (16668248-16668040)
               

               
               362-576, gnl|oryCun1|scaffold_161750 (552-805)
               

               
               362-576, gnl|panTro1|chr23 (20366418-20366689)
               

               
               362-576, gnl|rheMac2|chr10 (65414216-65414483)
               

               
               362-576, gnl|rn3|chr11 (85932372-85932642)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               362-576, gnl|bosTau2|chr17 (45438073-45438277)
               

               
               362-576, gnl|canFam2|chr26 (33994372-33994629)
               

               
               362-576, gnl|echTel1|scaffold_155588 (1562-1806)
               

               
               362-576, gnl|hg17|chr22 (20339562-20339832)
               

               
               362-576, gnl|Hg17|chr22 (20339666-20339831)
               

               
               362-576, gnl|loxAfr1|scaffold_6198 (105260-105548)
               

               
               362-576, gnl|mm7|chr16 (16668347-16668079)
               

               
               362-576, gnl|Mm7|chr16 (16668248-16668040)
               

               
               362-576, gnl|oryCun1|scaffold_161750 (552-805)
               

               
               362-576, gnl|panTro1|chr23 (20366418-20366689)
               

               
               362-576, gnl|rheMac2|chr10 (65414216-65414483)
               

               
               362-576, gnl|rn3|chr11 (85932372-85932642)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               eep (0.122564)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eep (0.122564)

	362-576, gnl\|bosTau2\|chr17 (45438073-45438277)
	362-576, gnl\|canFam2\|chr26 (33994372-33994629)
	362-576, gnl\|echTel1\|scaffold_155588 (1562-1806)
	362-576, gnl\|hg17\|chr22 (20339562-20339832)
	362-576, gnl\|Hg17\|chr22 (20339666-20339831)
	362-576, gnl\|loxAfr1\|scaffold_6198 (105260-105548)
	362-576, gnl\|mm7\|chr16 (16668347-16668079)
	362-576, gnl\|Mm7\|chr16 (16668248-16668040)
	362-576, gnl\|oryCun1\|scaffold_161750 (552-805)
	362-576, gnl\|panTro1\|chr23 (20366418-20366689)
	362-576, gnl\|rheMac2\|chr10 (65414216-65414483)
	362-576, gnl\|rn3\|chr11 (85932372-85932642)