Non-Coding RNA Search

Ss1.1-reep30c_a22.5

Sequence:


               
               GGAGAAACCAGAGCTGGTTTCCGGCCTATGCTGCCCTCCCAGGGGCCCCCCAGCGCCCCC
TCAGCACCCTCTCCCCCACCCCCAAAGCCACCCTGATCCTCAACTCCATCGGCAGCCTCA
GCAAGCTCCACTTGCAGCCGCTCACATTCTCTCGGAGTGGGAGTGGGCCGCAGAATCCAC
CCGTTTCCACGACTCCTGGGGAAGTGAGGACCACCCCTTCGGCCCCACCCCCAAGAAACC
GGAGGAAATCCGCTCACCGCGTGTTGGCAGAACTGGACGATGAGAGAGAGGCTCCCGAGA
GCCTCCCACCCGTGCTTATAGAGCCCAGGAAGAAACTGCTCCGTGTAGAGAAAACCCCAC
CGACACCCAGTGGAAATCGTCGTGGGCGTCCTCGGAAGCACCCAGTGAGCATCCCCAGGG
CTCCCCCAGCAGCTGGGGGCGGGGAGCCCTGTGCAGCCCCCTGTTGCTGCCTACCCCAAG
AAGAGACAGTAGCTTGGGTTCAGTGTGATGGTTGTGACACCTGGTTCCATGTGGCCTGTG
TTGGCTGCAGCATCCAGGCTGCCAAGGAAGCTGACTTCCGGTGCCCAGGCTGCCGTGTAG
GCATCCAGAGCTAGGGCCGGCCACCAACACCAGAGGACAGAGCCGGCACCTCCAGGCCAT
GGGGGGACAGGGAGTCCTAAGAGATGCCTTCTTCTTCCCTTGCCTTCCCCTGGGGTGGTG
GGTGGCAGCCCCCAGAGGAAGGGTCCATTGCTATGGATTATCAATTCAAGGCCCTTGTAG
CCAAGGTGACAGAAGAGATGGTTTATGACTGTGACCACTGCTGCCTCCAGGAAGTTGCCA
GTGAGCTGGAAATCCCCACTGTTATAAGCTGTTGTGGGTCCTTGTCATGGACACTAGAAT
GTGTGGTCAGGAGCATTCGACTGCAGAGGGCCTGCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAGAAACCAGAGCTGGTTTCCGGCCTATGCTGCCCTCCCAGGGGCCCCCCAGCGCCCCC
TCAGCACCCTCTCCCCCACCCCCAAAGCCACCCTGATCCTCAACTCCATCGGCAGCCTCA
GCAAGCTCCACTTGCAGCCGCTCACATTCTCTCGGAGTGGGAGTGGGCCGCAGAATCCAC
CCGTTTCCACGACTCCTGGGGAAGTGAGGACCACCCCTTCGGCCCCACCCCCAAGAAACC
GGAGGAAATCCGCTCACCGCGTGTTGGCAGAACTGGACGATGAGAGAGAGGCTCCCGAGA
GCCTCCCACCCGTGCTTATAGAGCCCAGGAAGAAACTGCTCCGTGTAGAGAAAACCCCAC
CGACACCCAGTGGAAATCGTCGTGGGCGTCCTCGGAAGCACCCAGTGAGCATCCCCAGGG
CTCCCCCAGCAGCTGGGGGCGGGGAGCCCTGTGCAGCCCCCTGTTGCTGCCTACCCCAAG
AAGAGACAGTAGCTTGGGTTCAGTGTGATGGTTGTGACACCTGGTTCCATGTGGCCTGTG
TTGGCTGCAGCATCCAGGCTGCCAAGGAAGCTGACTTCCGGTGCCCAGGCTGCCGTGTAG
GCATCCAGAGCTAGGGCCGGCCACCAACACCAGAGGACAGAGCCGGCACCTCCAGGCCAT
GGGGGGACAGGGAGTCCTAAGAGATGCCTTCTTCTTCCCTTGCCTTCCCCTGGGGTGGTG
GGTGGCAGCCCCCAGAGGAAGGGTCCATTGCTATGGATTATCAATTCAAGGCCCTTGTAG
CCAAGGTGACAGAAGAGATGGTTTATGACTGTGACCACTGCTGCCTCCAGGAAGTTGCCA
GTGAGCTGGAAATCCCCACTGTTATAAGCTGTTGTGGGTCCTTGTCATGGACACTAGAAT
GTGTGGTCAGGAGCATTCGACTGCAGAGGGCCTGCC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|2252608|emb|CAB10689.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|2252608|emb|CAB10689.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               676-784, - strand, RNAz p=0.949345

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               676-784, - strand, RNAz p=0.949345

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               373-936, gnl|bosTau2|chr23 (20485701-20485117)
               

               
               373-936, gnl|Hg17|chr6 (31238232-31238800)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               373-936, gnl|bosTau2|chr23 (20485701-20485117)
               

               
               373-936, gnl|Hg17|chr6 (31238232-31238800)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               eep (0.122564)
               

               
               ecc (0.115035)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eep (0.122564)
               

               
               ecc (0.115035)

	373-936, gnl\|bosTau2\|chr23 (20485701-20485117)
	373-936, gnl\|Hg17\|chr6 (31238232-31238800)