Non-Coding RNA Search

Ss1.1-reep30c_e23.5

Sequence:


               
               GCAGGCGAGTGAAAGGCTCATTGATGCAGCCGGCGGCGGCCTCGGAGTGCGGCGGGGCCA
GACTGTGATCACGTCCCGGCTCCCTGGTCTCCTCCTCCGCCTCTCCTGCTCCGCGCGTCC
GGGGCCGCCGCGCGCCATGCGCCCCCAGGGCCCCGCCGCCGCCTGCCCGCAGAGGCTCCT
AGGCCTCCTGCTGCTCCTGCTGCTGCAGCCGCAGGCGCCGTCGAGCGCCTCCGAGACCCC
CAAGGGGAAGCAAAAGGCGCTGCTCCGGCAGAGGGAGGTGGTGGACGTGTATAATGGAAT
GTGCTTACAAGGGCCTGCAGGGGTGCCTGGGCGAGATGGGAGCCCTGGAGCCAATGGCAT
TCCGGGTACCCCTGGGATCCCCGGTCGGGATGGATTCAAAGGAGAAAAGGGGGAATGCCT
GAGGGAAATCTTTGAGGAGTCCTGGACCCCTAACTACAAGCAGTGTTCATGGAGTTCGCT
GAATTATGGCATAGATCTTGGAAAAATTGCGGAGTGCACCTTCACAAAGATGCGTTCCAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCAGGCGAGTGAAAGGCTCATTGATGCAGCCGGCGGCGGCCTCGGAGTGCGGCGGGGCCA
GACTGTGATCACGTCCCGGCTCCCTGGTCTCCTCCTCCGCCTCTCCTGCTCCGCGCGTCC
GGGGCCGCCGCGCGCCATGCGCCCCCAGGGCCCCGCCGCCGCCTGCCCGCAGAGGCTCCT
AGGCCTCCTGCTGCTCCTGCTGCTGCAGCCGCAGGCGCCGTCGAGCGCCTCCGAGACCCC
CAAGGGGAAGCAAAAGGCGCTGCTCCGGCAGAGGGAGGTGGTGGACGTGTATAATGGAAT
GTGCTTACAAGGGCCTGCAGGGGTGCCTGGGCGAGATGGGAGCCCTGGAGCCAATGGCAT
TCCGGGTACCCCTGGGATCCCCGGTCGGGATGGATTCAAAGGAGAAAAGGGGGAATGCCT
GAGGGAAATCTTTGAGGAGTCCTGGACCCCTAACTACAAGCAGTGTTCATGGAGTTCGCT
GAATTATGGCATAGATCTTGGAAAAATTGCGGAGTGCACCTTCACAAAGATGCGTTCCAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|25989621|gb|AAN15749.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|25989621|gb|AAN15749.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               5-289, gnl|bosTau2|chr14 (36242806-36243087)
               

               
               5-289, gnl|Hg17|chr8 (104452936-104453210)
               

               
               5-289, gnl|Mm7|chr15 (39082218-39082488)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-289, gnl|bosTau2|chr14 (36242806-36243087)
               

               
               5-289, gnl|Hg17|chr8 (104452936-104453210)
               

               
               5-289, gnl|Mm7|chr15 (39082218-39082488)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               nlu (0.191681)
               

               
               ese (0.126502)
               

               
               eep (0.122564)
               

               
               ecc (0.115035)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nlu (0.191681)
               

               
               ese (0.126502)
               

               
               eep (0.122564)
               

               
               ecc (0.115035)

	5-289, gnl\|bosTau2\|chr14 (36242806-36243087)
	5-289, gnl\|Hg17\|chr8 (104452936-104453210)
	5-289, gnl\|Mm7\|chr15 (39082218-39082488)