Non-Coding RNA Search

Ss1.1-reep30c_p18.5

Sequence:


               
               ATTTTATGCAAGAGTCAATGGCACAGTACTGGAAGAGAAACAAATAGTTTGTAAAGTACA
AAATCTTGAAACTGTGTGCAGGAACTATCCTTATCTCTGGTTGGGAGCTACTTACTATAG
AGGACGGTTTTGTTCAGAATAGCAGTTTCTCTTATCAGTGATATCTCCTGACTCAGATGA
AGCTGAGGATAGAATACAGTTTGGACCTGGCAGGTAGATGCTGATTCCCCTTGGCCTTTC
CCTTGGATTTTTGCAAGGAAGGATATTCTGTTTTTGGATGCTGATACCCTTTTAAGGCTA
AAACTGCAAGTTTTATCATTTGAACTCACATGCTTTGCTGCTGATGGATGGAGCAGAGAG
AGAACTTAGTAGGCTGGATCTATGGCCTCCCTCTACTTCTCAGCATCTCGCCTTTGAATC
CACACCATGAGTTCCCCTCCTGTCAGCAGAAAGGGAAAATGGAAAACAGGAGCGTGTCCA
GGGTGGNGGAGTCCCCTTGGCAACCAGTCAACGTTGGTATGAAATGTNTCTCACACTGAA
TAGCTTATTATAGAACACTGGGTTCATTGAGAAAAGTGGGCAAACATAATGAATAAGAAT
TTCACTTTCAATGGTGACTTGGATAAAAAGTTTTTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTTTATGCAAGAGTCAATGGCACAGTACTGGAAGAGAAACAAATAGTTTGTAAAGTACA
AAATCTTGAAACTGTGTGCAGGAACTATCCTTATCTCTGGTTGGGAGCTACTTACTATAG
AGGACGGTTTTGTTCAGAATAGCAGTTTCTCTTATCAGTGATATCTCCTGACTCAGATGA
AGCTGAGGATAGAATACAGTTTGGACCTGGCAGGTAGATGCTGATTCCCCTTGGCCTTTC
CCTTGGATTTTTGCAAGGAAGGATATTCTGTTTTTGGATGCTGATACCCTTTTAAGGCTA
AAACTGCAAGTTTTATCATTTGAACTCACATGCTTTGCTGCTGATGGATGGAGCAGAGAG
AGAACTTAGTAGGCTGGATCTATGGCCTCCCTCTACTTCTCAGCATCTCGCCTTTGAATC
CACACCATGAGTTCCCCTCCTGTCAGCAGAAAGGGAAAATGGAAAACAGGAGCGTGTCCA
GGGTGGNGGAGTCCCCTTGGCAACCAGTCAACGTTGGTATGAAATGTNTCTCACACTGAA
TAGCTTATTATAGAACACTGGGTTCATTGAGAAAAGTGGGCAAACATAATGAATAAGAAT
TTCACTTTCAATGGTGACTTGGATAAAAAGTTTTTA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               362-451, - strand, RNAz p=0.997396

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               362-451, - strand, RNAz p=0.997396

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-636, gnl|bosTau2|chr11 (52842888-52842267)
               

               
               1-636, gnl|Hg17|chr2 (27784669-27785357)
               

               
               1-636, gnl|Mm7|chr5 (30543384-30543926)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-636, gnl|bosTau2|chr11 (52842888-52842267)
               

               
               1-636, gnl|Hg17|chr2 (27784669-27785357)
               

               
               1-636, gnl|Mm7|chr5 (30543384-30543926)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               mga (0.160205)
               

               
               cli (0.152812)
               

               
               eep (0.122564)
               

               
               nbm (0.0993246)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mga (0.160205)
               

               
               cli (0.152812)
               

               
               eep (0.122564)
               

               
               nbm (0.0993246)

	1-636, gnl\|bosTau2\|chr11 (52842888-52842267)
	1-636, gnl\|Hg17\|chr2 (27784669-27785357)
	1-636, gnl\|Mm7\|chr5 (30543384-30543926)