Non-Coding RNA Search

Ss1.1-reep31c_c14.5

Sequence:


               
               GCGGCCGCAGGCGCTCCACCGCGCGACTCCACGGCCTCGTGGCAAGCTCGCGTGGGCGAG
TGGCCTCGGACACTCTGGCCTCGCGAGGAGAGCGGCGCCGCGCCCTCGCCTAGTCCCCCT
GCGGGCAGGCAGAGACGACGGGAAGTTTTATTTGCAGCTCGGAGCCTGTGGCGGATGGTG
GGACTCTCCGGCCCTGTGCAGTATCGGACTGAGAAGCACTCCACAATGCCAGACTCACCT
GTGGATGTGAAGACCCCGTCCAGGCTGACCCCTCCCACGATGCCACCTCCCCCGACAACT
CAAGGAGCTCCCAGAACCAGTTCATTTACACCAACAACGTTAACCAATGGCACGAGCCAT
TCGCCTACAGCCTTGAATGGCGCCCCCTCGCCGCCCAATGGCTTTAGCAATGGGCCCTCC
TCTTCTTCTTCCTCTTCTCTGGCAAATCAACAGCTGCCCCCAGCCTGTGGCGCCAGGCAG
CTCAGTAAGCTGAAACGGTTCCTCACTACCTTGCAGCAGTTTGGCAATGACATTTCACCA
GAGATAGGAGAGCGAGTGCGCACCCTCGTACTAGGACTGGTGAACTCTACTTTGACAATT
GAAGAATTTCATTCTAAACTGCAAGAAGCTACGAACTTCCCACTGCGACCTTTTGTCATC
CCATTTTTGAAGGCCAACTTGCCCCTGCTGCAGCGCGAGCTCCTCCACTGCGCAAGGCTG
GCCAAACAGAACCCTGCCCAGTACCTCGCCCAGCATGAACAGCTGCTTCTGGATGCCAGC
ACCACCTCACCTGTTGACTCCTCAGAGCTGCTTCTCGATGTGAACGAAAACGGGAAGAGG
CGAACTCCAGACAGAACCAAAGAAAATGGCTTTGACAGAGAGCCTTTGCACTCAGAACAT
CCAAGCAAGCGACCATGCACTATTAGCCCAGGCCAGCGGTATAGTCCAAATAACGGCTTG
TCCTACCAGCCCAATGGCCTGCCTCACCCCACCCCTCCTCCACCTCAGCATTACCGTTTG
GATGATATGGCCATTGCCCACCACTACAGGGACTCCTATCGACACCCCAGCCACAGGGAC
CTCAGGGACAGAAACAGACCTATGGGGTTGCATGGCACACGTCAAGAAGAAATGATTGAT
CACAGACTAACAGACCGAGAATGGGCAGAGGAATGGAAACATCTTGACCATCTGTTAAAC
TGCATAATGGACATGGTAGAAAAAACAAGGCGATCTCTCACTGTACTAAGGCGATGTCAG
GAAGCAGATCGGGAGGAACTGAATTACTGGATCCGGCGGTACAGTGATGCCGAGGACTTA
AAAAAGGGCGGCAGCAGTAGCAGCAGTCACTCCAGGCAGCAGAGTCCTGTCAACCCAGAC
CCAGTTGCATTAGATGCGCATCGGGAATTCCTTCACAGGCCTGCTTCTGGATATGTGCCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGGCCGCAGGCGCTCCACCGCGCGACTCCACGGCCTCGTGGCAAGCTCGCGTGGGCGAG
TGGCCTCGGACACTCTGGCCTCGCGAGGAGAGCGGCGCCGCGCCCTCGCCTAGTCCCCCT
GCGGGCAGGCAGAGACGACGGGAAGTTTTATTTGCAGCTCGGAGCCTGTGGCGGATGGTG
GGACTCTCCGGCCCTGTGCAGTATCGGACTGAGAAGCACTCCACAATGCCAGACTCACCT
GTGGATGTGAAGACCCCGTCCAGGCTGACCCCTCCCACGATGCCACCTCCCCCGACAACT
CAAGGAGCTCCCAGAACCAGTTCATTTACACCAACAACGTTAACCAATGGCACGAGCCAT
TCGCCTACAGCCTTGAATGGCGCCCCCTCGCCGCCCAATGGCTTTAGCAATGGGCCCTCC
TCTTCTTCTTCCTCTTCTCTGGCAAATCAACAGCTGCCCCCAGCCTGTGGCGCCAGGCAG
CTCAGTAAGCTGAAACGGTTCCTCACTACCTTGCAGCAGTTTGGCAATGACATTTCACCA
GAGATAGGAGAGCGAGTGCGCACCCTCGTACTAGGACTGGTGAACTCTACTTTGACAATT
GAAGAATTTCATTCTAAACTGCAAGAAGCTACGAACTTCCCACTGCGACCTTTTGTCATC
CCATTTTTGAAGGCCAACTTGCCCCTGCTGCAGCGCGAGCTCCTCCACTGCGCAAGGCTG
GCCAAACAGAACCCTGCCCAGTACCTCGCCCAGCATGAACAGCTGCTTCTGGATGCCAGC
ACCACCTCACCTGTTGACTCCTCAGAGCTGCTTCTCGATGTGAACGAAAACGGGAAGAGG
CGAACTCCAGACAGAACCAAAGAAAATGGCTTTGACAGAGAGCCTTTGCACTCAGAACAT
CCAAGCAAGCGACCATGCACTATTAGCCCAGGCCAGCGGTATAGTCCAAATAACGGCTTG
TCCTACCAGCCCAATGGCCTGCCTCACCCCACCCCTCCTCCACCTCAGCATTACCGTTTG
GATGATATGGCCATTGCCCACCACTACAGGGACTCCTATCGACACCCCAGCCACAGGGAC
CTCAGGGACAGAAACAGACCTATGGGGTTGCATGGCACACGTCAAGAAGAAATGATTGAT
CACAGACTAACAGACCGAGAATGGGCAGAGGAATGGAAACATCTTGACCATCTGTTAAAC
TGCATAATGGACATGGTAGAAAAAACAAGGCGATCTCTCACTGTACTAAGGCGATGTCAG
GAAGCAGATCGGGAGGAACTGAATTACTGGATCCGGCGGTACAGTGATGCCGAGGACTTA
AAAAAGGGCGGCAGCAGTAGCAGCAGTCACTCCAGGCAGCAGAGTCCTGTCAACCCAGAC
CCAGTTGCATTAGATGCGCATCGGGAATTCCTTCACAGGCCTGCTTCTGGATATGTGCCA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q71VC2_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q71VC2_HUMAN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               328-446, - strand, RNAz p=0.632755

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               328-446, - strand, RNAz p=0.632755

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               226-1439, gnl|bosTau2|chr10 (49159083-49160293)
               

               
               226-1439, gnl|Hg17|chr20 (31658449-31688152)
               

               
               226-1439, gnl|Mm7|chr2 (154241284-154269740)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               226-1439, gnl|bosTau2|chr10 (49159083-49160293)
               

               
               226-1439, gnl|Hg17|chr20 (31658449-31688152)
               

               
               226-1439, gnl|Mm7|chr2 (154241284-154269740)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               ese (0.126502)
               

               
               eep (0.122564)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ese (0.126502)
               

               
               eep (0.122564)

	226-1439, gnl\|bosTau2\|chr10 (49159083-49160293)
	226-1439, gnl\|Hg17\|chr20 (31658449-31688152)
	226-1439, gnl\|Mm7\|chr2 (154241284-154269740)