Non-Coding RNA Search

Ss1.1-reep31c_e18.5

Sequence:


               
               TTGGCATCCTGGTGTACACAGATCCAGCAGGTCTGCGCACCTACCTCGCTGCCCAGGTGA
CAGAACAGAGCCCGCTGGGCGAGGGAGCCCTGGCCCCCATGCCTGTGCCTAGTGGTGTGC
TGCCTGCCAGTCACCCGGACCCTGCCTTCTCCATCTTCCCACCTGAAGCCCCGAAGTTAC
TTGAGAACCAGACATTGCCAGGGGAGCCGCCTGAGCCGGGGGGTCAGGCAGAGGGCGTCC
ATGACAGCCCAGCCCCAGAGGTAACCTGGGGGCCTGAGGATGAGGAACTTTGGAGGAAAT
TGTCCTTCCGCCACTGGCCAACGCTCTTCAGCTACTACAACATCACACTGGCCAAGAGGT
ATATCAGCCTGCTTCCTGTCATCCCGGTTACGCTCCGTCTGAACCCGAGGGAGGCCCTGG
AGGGTCGGCACCCTCAGGATAGCCGCAGTGCGTGGTCCCCGCCGCAGCCCGCGCAGGGTG
GGCTCTGGGATGCTGGCCCCAAGGGGCCAGGCGTGGCACAGGCGCATAGAGACGTCACCC
TGTACAAGGTGGCAGCACTCGGCCTGGCCACGGGCATCCTCCTCGTGCTGCTGCTACTCT
GCCTGTACCGCGTGCTCTGCCCTCGCAACTACGGGCAGCCTGGTGCAGGGCCCGGCCGGC
GGCGGCGTGGGGAGCTGCCCTGTGATGACTACGGCTATGCACCGCCTGAAACAGAAATCG
TGCCCCTGGTGCTGAGAGGGCACCTCATGGACATTGAATGTCTGGCCAGCGACGGCATGC
TGCTGGTGAGCTGTTGCCTGGCGGGCCACGTGTGTGTGTGGGATGCACAGACCGGGGACT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTGGCATCCTGGTGTACACAGATCCAGCAGGTCTGCGCACCTACCTCGCTGCCCAGGTGA
CAGAACAGAGCCCGCTGGGCGAGGGAGCCCTGGCCCCCATGCCTGTGCCTAGTGGTGTGC
TGCCTGCCAGTCACCCGGACCCTGCCTTCTCCATCTTCCCACCTGAAGCCCCGAAGTTAC
TTGAGAACCAGACATTGCCAGGGGAGCCGCCTGAGCCGGGGGGTCAGGCAGAGGGCGTCC
ATGACAGCCCAGCCCCAGAGGTAACCTGGGGGCCTGAGGATGAGGAACTTTGGAGGAAAT
TGTCCTTCCGCCACTGGCCAACGCTCTTCAGCTACTACAACATCACACTGGCCAAGAGGT
ATATCAGCCTGCTTCCTGTCATCCCGGTTACGCTCCGTCTGAACCCGAGGGAGGCCCTGG
AGGGTCGGCACCCTCAGGATAGCCGCAGTGCGTGGTCCCCGCCGCAGCCCGCGCAGGGTG
GGCTCTGGGATGCTGGCCCCAAGGGGCCAGGCGTGGCACAGGCGCATAGAGACGTCACCC
TGTACAAGGTGGCAGCACTCGGCCTGGCCACGGGCATCCTCCTCGTGCTGCTGCTACTCT
GCCTGTACCGCGTGCTCTGCCCTCGCAACTACGGGCAGCCTGGTGCAGGGCCCGGCCGGC
GGCGGCGTGGGGAGCTGCCCTGTGATGACTACGGCTATGCACCGCCTGAAACAGAAATCG
TGCCCCTGGTGCTGAGAGGGCACCTCATGGACATTGAATGTCTGGCCAGCGACGGCATGC
TGCTGGTGAGCTGTTGCCTGGCGGGCCACGTGTGTGTGTGGGATGCACAGACCGGGGACT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               3-281, - strand, RNAz p=0.835145

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               3-281, - strand, RNAz p=0.835145

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               143-295, - strand, RNAmicro p=0.985905

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               143-295, - strand, RNAmicro p=0.985905

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               3-360, gnl|bosTau2|chr22 (40312200-40311843)
               

               
               3-360, gnl|Hg17|chr3 (47436177-47435820)
               

               
               3-360, gnl|Mm7|chr9 (110077523-110077877)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-360, gnl|bosTau2|chr22 (40312200-40311843)
               

               
               3-360, gnl|Hg17|chr3 (47436177-47435820)
               

               
               3-360, gnl|Mm7|chr9 (110077523-110077877)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               eep (0.122564)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eep (0.122564)

	3-360, gnl\|bosTau2\|chr22 (40312200-40311843)
	3-360, gnl\|Hg17\|chr3 (47436177-47435820)
	3-360, gnl\|Mm7\|chr9 (110077523-110077877)