Non-Coding RNA Search

Ss1.1-reep31c_i14.5

Sequence:


               
               CGGGTATCTGCTCCATTATTTATAAGCGCATTCTGGCCTCGGCGCTGGCGGCCCGGCCGG
CTCCCCGGGGCCGTCCCGGGGGGCCGCGGGCTGGGGCCAGGGCGCCCCGTCGTCGGCCTC
GGCCCCTCGGCCCCTCGGCGCCGTCGGTGGTGACTCCAGCAGGGCGGGCGGGCCGAGGCG
CCTCCCTCCCTCCGTCCCGGAGGCCGCCGGGGGTTCCGCGTGCGTCTGCGGAGCCGCAGC
CGCGCGCGCGTCAGTGCAATAGGTGGCGAGGGCCGCGTCTGTAAATGTGTACATAGCTGC
CCCGCTAAAGAGGTGAGATATTCGGGGGTCTGTACAGAGGCTGAGGGGACGCGACAGGGT
CTGCCCGGGAGACCTTCTCGAGAGGTTATTTCGCATCCGCCGCGCCGGGCGCCCGCGGGA
CCCGCTCAGACGCTTCCTGGGCCTTTTCCCGAGCTCGGCAGCCGGCCCGTGGACGTCGCA
GGGCAGAACCTTCTCGAGCGGCCGCCCTGGGCACTGCCGAGAAGGTGACCTTTCGGAGGT
CCGCCCAGCTTAACGCAGGAAGTGAAGAAACAGACCCTCCGCGGCGCCTGTCCGCGCGCG
TGGGTCCCCCGTGTGCGCGCGAGACGGAGGAGCCGAGGTCCCTGGGATGCTGCCGTGAAC
CAGGTGGCCCCGGCCGCAGGGGCGTCTTCCCCATCGTCCCGGGAGGAGAAGGGGTTCCTG
TTTTCTCATGCTTCAGAGCCTTCAAGCTCTGATGACCTCGTGTGCTAAGAACAAGTCTCG
AAAGCACGCGTGGGTTTATGAGACTCTTAGGATGGCAGGAGAACGTTTTGTACACGGTTC
AGTATATAGAAAACGCAAAAGTGTAATTTTGTAACAAATAAAATCGCAGGTATCTTTCGG
TTCAGAGAGCTAGAATAGGTTATTTGTCTAAGTAGGATCCATAGTTAGGTTCTTCCATGA
AAAGATTCGAATGAAGTATGTGAACTCAATCGCTGGTTTTCTAAGATAAGATATGGGACA
CGGGTCATATAACAATATTTTATATTGTGTTTTATGAAATCGATTTTGTCTTATGTGTTT
TTAATTGTATCATTGAAGACATATTTTAAACCAAAGGGATTAAATTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGGGTATCTGCTCCATTATTTATAAGCGCATTCTGGCCTCGGCGCTGGCGGCCCGGCCGG
CTCCCCGGGGCCGTCCCGGGGGGCCGCGGGCTGGGGCCAGGGCGCCCCGTCGTCGGCCTC
GGCCCCTCGGCCCCTCGGCGCCGTCGGTGGTGACTCCAGCAGGGCGGGCGGGCCGAGGCG
CCTCCCTCCCTCCGTCCCGGAGGCCGCCGGGGGTTCCGCGTGCGTCTGCGGAGCCGCAGC
CGCGCGCGCGTCAGTGCAATAGGTGGCGAGGGCCGCGTCTGTAAATGTGTACATAGCTGC
CCCGCTAAAGAGGTGAGATATTCGGGGGTCTGTACAGAGGCTGAGGGGACGCGACAGGGT
CTGCCCGGGAGACCTTCTCGAGAGGTTATTTCGCATCCGCCGCGCCGGGCGCCCGCGGGA
CCCGCTCAGACGCTTCCTGGGCCTTTTCCCGAGCTCGGCAGCCGGCCCGTGGACGTCGCA
GGGCAGAACCTTCTCGAGCGGCCGCCCTGGGCACTGCCGAGAAGGTGACCTTTCGGAGGT
CCGCCCAGCTTAACGCAGGAAGTGAAGAAACAGACCCTCCGCGGCGCCTGTCCGCGCGCG
TGGGTCCCCCGTGTGCGCGCGAGACGGAGGAGCCGAGGTCCCTGGGATGCTGCCGTGAAC
CAGGTGGCCCCGGCCGCAGGGGCGTCTTCCCCATCGTCCCGGGAGGAGAAGGGGTTCCTG
TTTTCTCATGCTTCAGAGCCTTCAAGCTCTGATGACCTCGTGTGCTAAGAACAAGTCTCG
AAAGCACGCGTGGGTTTATGAGACTCTTAGGATGGCAGGAGAACGTTTTGTACACGGTTC
AGTATATAGAAAACGCAAAAGTGTAATTTTGTAACAAATAAAATCGCAGGTATCTTTCGG
TTCAGAGAGCTAGAATAGGTTATTTGTCTAAGTAGGATCCATAGTTAGGTTCTTCCATGA
AAAGATTCGAATGAAGTATGTGAACTCAATCGCTGGTTTTCTAAGATAAGATATGGGACA
CGGGTCATATAACAATATTTTATATTGTGTTTTATGAAATCGATTTTGTCTTATGTGTTT
TTAATTGTATCATTGAAGACATATTTTAAACCAAAGGGATTAAATTTT

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               653-1128, gnl|bosTau2|chr11 (68035771-68035302)
               

               
               653-1128, gnl|Hg17|chr2 (10092526-10092986)
               

               
               653-1128, gnl|Mm7|chr12 (22453427-22453873)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               653-1128, gnl|bosTau2|chr11 (68035771-68035302)
               

               
               653-1128, gnl|Hg17|chr2 (10092526-10092986)
               

               
               653-1128, gnl|Mm7|chr12 (22453427-22453873)

Expressed library(ies): 7 entry(ies)

More info

Expressed library(ies): 7 entry(ies)

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               ton (0.351)
               

               
               sag (0.182715)
               

               
               mcp (0.170648)
               

               
               mga (0.160205)
               

               
               ski (0.146735)
               

               
               pla (0.133672)
               

               
               eep (0.122564)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ton (0.351)
               

               
               sag (0.182715)
               

               
               mcp (0.170648)
               

               
               mga (0.160205)
               

               
               ski (0.146735)
               

               
               pla (0.133672)
               

               
               eep (0.122564)

	653-1128, gnl\|bosTau2\|chr11 (68035771-68035302)
	653-1128, gnl\|Hg17\|chr2 (10092526-10092986)
	653-1128, gnl\|Mm7\|chr12 (22453427-22453873)

	ton (0.351)
	sag (0.182715)
	mcp (0.170648)
	mga (0.160205)
	ski (0.146735)
	pla (0.133672)
	eep (0.122564)