Non-Coding RNA Search

Ss1.1-reep31c_k21.5

Sequence:


               
               AAAAAGGCTTTTACTTTTTCTAAACTGGGAGGATTTCAGGACCTCCTATAGCAGAAGCAG
CTGGAATGGAAAAGAAACCTCAGGTTCCCAGTCTGCCTCAAGGACTCAAAGCTGGTTCCA
GCCTGGCCTAGTTTAAGGCTCAACAGGTGCCAGAGGGCAAAATGGGAGGGGCCCTACAAT
ATGGCAGAGTAAAGAGGCAAAGTTCAGAGGCAGAAGGGGTGGTGGTTCCCTAAGGTAGGG
GAGAGATGGGGTGGGCAGAAGGAGGAGAGAAGAGAAACCTGTATTATAGGGAGGGAACTT
GAGTTGGTAATCTAAGTAACTATGGGGCCTCAAGAGATTTAGCAGAAGGAAGGAGTGAAG
AGGGGAGGGAACACATCTTCTAGTAGATATCATGGGGAAATCTAGCTCAAAATATGAAAT
CTGGGGAGTTTCCATAGAGGGGGGAGACCTGAAGAGGCTTCCTGAGTACCCTGACCCTGT
TTCCCCCACCCCTTGTGTGTGTGTGTGTGTGTGTGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAAAGGCTTTTACTTTTTCTAAACTGGGAGGATTTCAGGACCTCCTATAGCAGAAGCAG
CTGGAATGGAAAAGAAACCTCAGGTTCCCAGTCTGCCTCAAGGACTCAAAGCTGGTTCCA
GCCTGGCCTAGTTTAAGGCTCAACAGGTGCCAGAGGGCAAAATGGGAGGGGCCCTACAAT
ATGGCAGAGTAAAGAGGCAAAGTTCAGAGGCAGAAGGGGTGGTGGTTCCCTAAGGTAGGG
GAGAGATGGGGTGGGCAGAAGGAGGAGAGAAGAGAAACCTGTATTATAGGGAGGGAACTT
GAGTTGGTAATCTAAGTAACTATGGGGCCTCAAGAGATTTAGCAGAAGGAAGGAGTGAAG
AGGGGAGGGAACACATCTTCTAGTAGATATCATGGGGAAATCTAGCTCAAAATATGAAAT
CTGGGGAGTTTCCATAGAGGGGGGAGACCTGAAGAGGCTTCCTGAGTACCCTGACCCTGT
TTCCCCCACCCCTTGTGTGTGTGTGTGTGTGTGTGT

Aligned organism(s): 5 entry(ies)

More info

Aligned organism(s): 5 entry(ies)

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               11-213, gnl|bosTau2|chr3 (17179192-17178986)
               

               
               11-213, gnl|Hg17|chr1 (147065816-147066021)
               

               
               11-213, gnl|Mm7|chr3 (95758729-95758522)
               


               
               290-488, gnl|bosTau2|chr3 (17178975-17178786)
               

               
               290-488, gnl|Hg17|chr1 (147066064-147066296)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               11-213, gnl|bosTau2|chr3 (17179192-17178986)
               

               
               11-213, gnl|Hg17|chr1 (147065816-147066021)
               

               
               11-213, gnl|Mm7|chr3 (95758729-95758522)
               


               
               290-488, gnl|bosTau2|chr3 (17178975-17178786)
               

               
               290-488, gnl|Hg17|chr1 (147066064-147066296)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               cje (0.165235)
               

               
               eep (0.122564)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cje (0.165235)
               

               
               eep (0.122564)

	11-213, gnl\|bosTau2\|chr3 (17179192-17178986)
	11-213, gnl\|Hg17\|chr1 (147065816-147066021)
	11-213, gnl\|Mm7\|chr3 (95758729-95758522)

	290-488, gnl\|bosTau2\|chr3 (17178975-17178786)
	290-488, gnl\|Hg17\|chr1 (147066064-147066296)